X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FAlignmentAnnotationUtilsTest.java;h=cdb950e00421d9f4a90e0d3fe04787291d8fbbc5;hb=a7169b1c72607f3c9357195b4999869650a2a891;hp=610a60ad482c1d20b79fb076824a644c35f1c1f3;hpb=5f4e1e4c330b045e9c8bce28ee132a0fca3834d8;p=jalview.git

diff --git a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
index 610a60a..cdb950e 100644
--- a/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
+++ b/test/jalview/analysis/AlignmentAnnotationUtilsTest.java
@@ -29,7 +29,8 @@ import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Annotation;
 import jalview.datamodel.SequenceI;
 import jalview.gui.JvOptionPane;
-import jalview.io.AppletFormatAdapter;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
 
 import java.io.IOException;
 import java.util.ArrayList;
@@ -152,7 +153,7 @@ public class AlignmentAnnotationUtilsTest
   public void setUp() throws IOException
   {
     alignment = new jalview.io.FormatAdapter().readFile(TEST_DATA,
-            AppletFormatAdapter.PASTE, "FASTA");
+            DataSourceType.PASTE, FileFormat.Fasta);
 
     AlignmentAnnotation[] anns = new AlignmentAnnotation[SEQ_ANN_COUNT];
     for (int i = 0; i < anns.length; i++)
@@ -408,9 +409,8 @@ public class AlignmentAnnotationUtilsTest
     anns[4].graphGroup = -1;
     anns[4].visible = true;
 
-    BitSet result = AlignmentAnnotationUtils
-            .getVisibleLineGraphGroups(AlignmentAnnotationUtils
-                    .asList(anns));
+    BitSet result = AlignmentAnnotationUtils.getVisibleLineGraphGroups(
+            AlignmentAnnotationUtils.asList(anns));
     assertTrue(result.get(5));
     assertFalse(result.get(0));
     assertFalse(result.get(1));