X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FAlignmentUtilsTests.java;h=4baa38440d8dca237132c42996a7ff6f119554c6;hb=a3125b0190d8f97ea9543006686d5fe4b8247ff2;hp=1193c3962c0132602cea3e99d95d30c4cc715552;hpb=f83b6877ab7ff3fc5db5c946e16c74e016437311;p=jalview.git

diff --git a/test/jalview/analysis/AlignmentUtilsTests.java b/test/jalview/analysis/AlignmentUtilsTests.java
index 1193c39..4baa384 100644
--- a/test/jalview/analysis/AlignmentUtilsTests.java
+++ b/test/jalview/analysis/AlignmentUtilsTests.java
@@ -2630,6 +2630,11 @@ public class AlignmentUtilsTests
     assertNotNull(
             "No contact matrix recovered after reference annotation transfer",
             cl);
+    // semantics of sequence associated contact list is slightly tricky - column 3 in alignment should have data
+    cl = al.getContactListFor(alan, 3);
+    assertNotNull(
+            "Contact matrix should have data for last position in sequence",
+            cl);
 
     ContactMatrixI cm2 = new SeqDistanceContactMatrix(4);
     dssq.addContactList(cm2);