X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FAverageDistanceEngineTest.java;h=236e354a3d2efce168f4d78b8c113f3f27a16a27;hb=164fb77632cc3c9a3b5f5ac5290eadec920ffbc6;hp=6d9ab50c31ad49221ee77249855e594edd01e8e5;hpb=7420ce36f2b43280ef610e3743960207e4c2dbe3;p=jalview.git
diff --git a/test/jalview/analysis/AverageDistanceEngineTest.java b/test/jalview/analysis/AverageDistanceEngineTest.java
index 6d9ab50..236e354 100644
--- a/test/jalview/analysis/AverageDistanceEngineTest.java
+++ b/test/jalview/analysis/AverageDistanceEngineTest.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.analysis;
import java.io.File;
@@ -32,66 +52,77 @@ import jalview.ws.datamodel.alphafold.PAEContactMatrix;
public class AverageDistanceEngineTest
{
- @BeforeClass(alwaysRun = true)
- public void setUpJvOptionPane()
+ @BeforeClass(alwaysRun = true)
+ public void setUpJvOptionPane()
+ {
+ JvOptionPane.setInteractiveMode(false);
+ JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+ }
+
+ @BeforeMethod(alwaysRun = true)
+ public void loadProperties()
+ {
+ Cache.loadProperties("test/jalview/bin/TestProps.jvprops");
+ }
+
+ @Test(groups = { "Functional" })
+ public void testUPGMAEngine() throws Exception
+ {
+ AlignFrame af = new FileLoader(false).LoadFileWaitTillLoaded(
+ "examples/test_fab41.result/sample.a3m", DataSourceType.FILE);
+ AlignmentI seqs = af.getViewport().getAlignment();
+ SequenceI target = seqs.getSequenceAt(0);
+ File testPAE = new File(
+ "examples/test_fab41.result/test_fab41_predicted_aligned_error_v1.json");
+ List