X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FConservationTest.java;fp=test%2Fjalview%2Fanalysis%2FConservationTest.java;h=e1fdf51109ed3402ca251448179c5b0c24969e22;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=fb58655be2316b2dd4c39b6c93fde563494dd435;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/test/jalview/analysis/ConservationTest.java b/test/jalview/analysis/ConservationTest.java
index fb58655..e1fdf51 100644
--- a/test/jalview/analysis/ConservationTest.java
+++ b/test/jalview/analysis/ConservationTest.java
@@ -211,7 +211,7 @@ public class ConservationTest
     seqs.add(new Sequence("seq3", "V-IW-"));
     seqs.add(new Sequence("seq4", "VGLH-"));
     seqs.add(new Sequence("seq5", "VGLH-"));
-  
+
     /*
      * threshold 50% means a residue has to occur 3 or more times
      * in a column to be counted for conservation
@@ -221,7 +221,7 @@ public class ConservationTest
     // but it is treated as percentage threshold in calculate() ?
     Conservation cons = new Conservation("", 50, seqs, 0, 4);
     cons.calculate();
-  
+
     /*
      * column 0: all V (hydrophobic/aliphatic/small)
      */
@@ -236,7 +236,7 @@ public class ConservationTest
     assertEquals(colCons.get("polar").intValue(), 0);
     assertEquals(colCons.get("positive").intValue(), 0);
     assertEquals(colCons.get("aromatic").intValue(), 0);
-  
+
     /*
      * column 1: all G (hydrophobic/small/tiny)
      * gaps are ignored as not above threshold
@@ -252,7 +252,7 @@ public class ConservationTest
     assertEquals(colCons.get("polar").intValue(), 0);
     assertEquals(colCons.get("positive").intValue(), 0);
     assertEquals(colCons.get("aromatic").intValue(), 0);
-  
+
     /*
      * column 2: I/L (aliphatic/hydrophobic), all others negatively conserved
      */
@@ -267,13 +267,13 @@ public class ConservationTest
     assertEquals(colCons.get("polar").intValue(), 0);
     assertEquals(colCons.get("positive").intValue(), 0);
     assertEquals(colCons.get("aromatic").intValue(), 0);
-  
+
     /*
      * column 3: nothing above threshold
      */
     colCons = cons.total[3];
     assertTrue(colCons.isEmpty());
-  
+
     /*
      * column 4: all gaps - counted as having all properties
      */
@@ -329,16 +329,14 @@ public class ConservationTest
      * verify tooltips; conserved properties are sorted alphabetically within
      * positive followed by negative
      */
-    assertEquals(
-            cons.getTooltip(0),
+    assertEquals(cons.getTooltip(0),
             "aliphatic hydrophobic small !aromatic !charged !negative !polar !positive !proline !tiny");
-    assertEquals(
-            cons.getTooltip(1),
+    assertEquals(cons.getTooltip(1),
             "hydrophobic small tiny !aliphatic !aromatic !charged !negative !polar !positive !proline");
-    assertEquals(
-            cons.getTooltip(2),
+    assertEquals(cons.getTooltip(2),
             "aliphatic hydrophobic !aromatic !charged !negative !polar !positive !proline !small !tiny");
-    assertEquals(cons.getTooltip(3), "hydrophobic !negative !proline !tiny");
+    assertEquals(cons.getTooltip(3),
+            "hydrophobic !negative !proline !tiny");
     assertEquals(cons.getTooltip(4), "hydrophobic");
     assertEquals(cons.getTooltip(5), "");
     assertEquals(cons.getTooltip(6), "");