X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FCrossRefTest.java;h=0265af353ab30050d97d862ea12b76f8e856bdb1;hb=04a4d60a50394d846d0479c442facebe360b5b9c;hp=95be1ff56de4ec3c7c545461edcbd193d644b384;hpb=653e250e0a2a5dd455ae4c52794c4ce0de340418;p=jalview.git diff --git a/test/jalview/analysis/CrossRefTest.java b/test/jalview/analysis/CrossRefTest.java index 95be1ff..0265af3 100644 --- a/test/jalview/analysis/CrossRefTest.java +++ b/test/jalview/analysis/CrossRefTest.java @@ -106,7 +106,7 @@ public class CrossRefTest public void testFindXrefSourcesForSequence_proteinToDna() { SequenceI seq = new Sequence("Seq1", "MGKYQARLSS"); - List sources = new ArrayList(); + List sources = new ArrayList<>(); AlignmentI al = new Alignment(new SequenceI[] {}); /* @@ -132,8 +132,9 @@ public class CrossRefTest sources = new CrossRef(new SequenceI[] { seq }, al) .findXrefSourcesForSequences(false); // method is patched to remove EMBL from the sources to match - assertEquals(3, sources.size()); - assertEquals("[EMBLCDS, GENEDB, ENSEMBL]", sources.toString()); + assertEquals(4, sources.size()); + assertEquals("[EMBLCDS, GENEDB, ENSEMBL, ENSEMBLGENOMES]", + sources.toString()); /* * add a sequence to the alignment which has a dbref to UNIPROT|A1234 @@ -270,7 +271,7 @@ public class CrossRefTest pep1.addDBRef(new DBRefEntry("UNIPROT", "0", "Q9ZTS2")); AlignmentI al = new Alignment(new SequenceI[] { dna1, pep1 }); - List result = new ArrayList(); + List result = new ArrayList<>(); /* * first search for a dbref nowhere on the alignment: