X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FTestAlignSeq.java;h=2dee421c8ad6f1cd4d9ec511de80f2a3e4f44ad5;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=81514a42d9a21162dab68fa996135e312c3c6a44;hpb=ab22918ab8fc67d30dad1fb1ae0f37e51f49df95;p=jalview.git

diff --git a/test/jalview/analysis/TestAlignSeq.java b/test/jalview/analysis/TestAlignSeq.java
index 81514a4..2dee421 100644
--- a/test/jalview/analysis/TestAlignSeq.java
+++ b/test/jalview/analysis/TestAlignSeq.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -46,7 +46,7 @@ public class TestAlignSeq
   /**
    * @throws java.lang.Exception
    */
-  @BeforeMethod
+  @BeforeMethod(alwaysRun = true)
   public void setUp() throws Exception
   {
     s1 = new Sequence("Seq1", "ASDFAQQQRRRSSS");
@@ -59,14 +59,13 @@ public class TestAlignSeq
 
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   /**
    * simple test that mapping from alignment corresponds identical positions.
    */
   public void testGetMappingForS1()
   {
-    AlignSeq as = AlignSeq
-            .doGlobalNWAlignment(s1, s2, AlignSeq.PEP);
+    AlignSeq as = AlignSeq.doGlobalNWAlignment(s1, s2, AlignSeq.PEP);
     System.out.println("s1: " + as.getAStr1());
     System.out.println("s2: " + as.getAStr2());
 
@@ -86,7 +85,7 @@ public class TestAlignSeq
     }
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testExtractGaps()
   {
     assertNull(AlignSeq.extractGaps(null, null));
@@ -96,7 +95,7 @@ public class TestAlignSeq
     assertEquals("ABCD", AlignSeq.extractGaps(" .-", ". -A-B.C D."));
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testPrintAlignment()
   {
     AlignSeq as = AlignSeq.doGlobalNWAlignment(s1, s3, AlignSeq.PEP);