X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2FTestAlignSeq.java;h=7352b941461b1d683f1d53a700c22482da253493;hb=be32c14cd8e48fe0a207cd7030cb9cd46f894678;hp=c6a24b489d842c98731e9f44b6713a123970f360;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git diff --git a/test/jalview/analysis/TestAlignSeq.java b/test/jalview/analysis/TestAlignSeq.java index c6a24b4..7352b94 100644 --- a/test/jalview/analysis/TestAlignSeq.java +++ b/test/jalview/analysis/TestAlignSeq.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,7 +20,9 @@ */ package jalview.analysis; -import static org.junit.Assert.*; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertNull; +import static org.junit.Assert.assertTrue; import jalview.datamodel.Mapping; import jalview.datamodel.Sequence; import jalview.datamodel.SequenceI; @@ -74,4 +76,13 @@ public class TestAlignSeq } } + @Test + public void testExtractGaps() + { + assertNull(AlignSeq.extractGaps(null, null)); + assertNull(AlignSeq.extractGaps(". -", null)); + assertNull(AlignSeq.extractGaps(null, "AB-C")); + + assertEquals("ABCD", AlignSeq.extractGaps(" .-", ". -A-B.C D.")); + } }