X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fanalysis%2Fscoremodels%2FPIDModelTest.java;fp=test%2Fjalview%2Fanalysis%2Fscoremodels%2FPIDModelTest.java;h=6f03f1dcf30c34b36e90639db7e63a7a55224bae;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=e8ffd2f691eca7ce389c34dbe5884e4da054a965;hpb=e7338a61f3ce96dadf44ac80b2b32cc5ba4b94c8;p=jalview.git

diff --git a/test/jalview/analysis/scoremodels/PIDModelTest.java b/test/jalview/analysis/scoremodels/PIDModelTest.java
index e8ffd2f..6f03f1d 100644
--- a/test/jalview/analysis/scoremodels/PIDModelTest.java
+++ b/test/jalview/analysis/scoremodels/PIDModelTest.java
@@ -146,16 +146,17 @@ public class PIDModelTest
   {
     String s1 = "FR-K-S";
     String s2 = "FS--L";
-  
+
     /*
      * match gap-gap and gap-char
      * shorter sequence treated as if with trailing gaps
      * PID = 5/6 = 83.333...%
      */
-    SimilarityParamsI params = new SimilarityParams(true, true, true, false);
+    SimilarityParamsI params = new SimilarityParams(true, true, true,
+            false);
     assertEquals(PIDModel.computePID(s1, s2, params), 500d / 6);
     assertEquals(PIDModel.computePID(s2, s1, params), 500d / 6);
-  
+
     /*
      * match gap-char but not gap-gap
      * PID = 4/5 = 80%
@@ -163,7 +164,7 @@ public class PIDModelTest
     params = new SimilarityParams(false, true, true, false);
     assertEquals(PIDModel.computePID(s1, s2, params), 80d);
     assertEquals(PIDModel.computePID(s2, s1, params), 80d);
-  
+
     /*
      * include gaps but don't match them
      * include gap-gap, counted as identity
@@ -172,7 +173,7 @@ public class PIDModelTest
     params = new SimilarityParams(true, false, true, false);
     assertEquals(PIDModel.computePID(s1, s2, params), 100d / 3);
     assertEquals(PIDModel.computePID(s2, s1, params), 100d / 3);
-  
+
     /*
      * include gaps but don't match them
      * exclude gap-gap