X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FCommandLineOperations.java;h=3ac86567ec24e6329b0ac3bc10bc11c34239b82c;hb=bd7b3138379c2db8507fe7e8d25f5a921e2d9df7;hp=2163a7a9ddc0e344b9378d55b926c0ae2c4fcc3f;hpb=b242acfd02dab9c625454c91c6cb1ac71a4bfe9f;p=jalview.git

diff --git a/test/jalview/bin/CommandLineOperations.java b/test/jalview/bin/CommandLineOperations.java
index 2163a7a..3ac8656 100644
--- a/test/jalview/bin/CommandLineOperations.java
+++ b/test/jalview/bin/CommandLineOperations.java
@@ -20,6 +20,8 @@
  */
 package jalview.bin;
 
+import jalview.gui.JvOptionPane;
+
 import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
@@ -28,13 +30,27 @@ import java.util.ArrayList;
 
 import org.testng.Assert;
 import org.testng.FileAssert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.BeforeTest;
 import org.testng.annotations.DataProvider;
 import org.testng.annotations.Test;
 
+import io.github.classgraph.ClassGraph;
+import io.github.classgraph.ScanResult;
+
 public class CommandLineOperations
 {
-  private static final int TEST_TIMEOUT = 4000;
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
+  private static final int TEST_TIMEOUT = 9000; // Note longer timeout needed on
+                                                // full test run than on
+                                                // individual tests
 
   private static final int SETUP_TIMEOUT = 9000;
 
@@ -42,7 +58,7 @@ public class CommandLineOperations
 
   private static final int MINFILESIZE_BIG = 4096;
 
-  private ArrayList<String> successfulCMDs = new ArrayList<String>();
+  private ArrayList<String> successfulCMDs = new ArrayList<>();
 
   /***
    * from
@@ -100,13 +116,39 @@ public class CommandLineOperations
     }
   }
 
+  private static ClassGraph scanner = null;
+
+  private static String classpath = null;
+
+  public synchronized static String getClassPath()
+  {
+    if (scanner == null)
+    {
+      scanner = new ClassGraph();
+      ScanResult scan = scanner.scan();
+      classpath = scan.getClasspath();
+    }
+    while (classpath == null)
+    {
+      try
+      {
+        Thread.sleep(10);
+      } catch (InterruptedException x)
+      {
+
+      }
+    }
+    return classpath;
+  }
   private Worker jalviewDesktopRunner(boolean withAwt, String cmd,
           int timeout)
   {
+    // Note: JAL-3065 - don't include quotes for lib/* because the arguments are
+    // not expanded by the shell
+    String classpath = getClassPath();
     String _cmd = "java "
             + (withAwt ? "-Djava.awt.headless=true" : "")
-            + " -Djava.ext.dirs=./lib -classpath ./classes jalview.bin.Jalview ";
-    System.out.println("CMD [" + cmd + "]");
+            + " -classpath " + classpath + " jalview.bin.Jalview ";
     Process ls2_proc = null;
     Worker worker = null;
     try