X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FCommandLineOperations.java;h=564e57d0112aebda9367834d101918211ccb71cf;hb=a3d82d30b2bc55f250bbf1c94975308407e8aae7;hp=e878e2574179555c0c6237bd9b75a8e30b5f7f12;hpb=123dfa2839bd9786e205a4764f0f5dea69b77eb1;p=jalview.git

diff --git a/test/jalview/bin/CommandLineOperations.java b/test/jalview/bin/CommandLineOperations.java
index e878e25..564e57d 100644
--- a/test/jalview/bin/CommandLineOperations.java
+++ b/test/jalview/bin/CommandLineOperations.java
@@ -196,6 +196,7 @@ public class CommandLineOperations
     String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props test/jalview/io/testProps.jvprops -colour zappo "
             + "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree "
             + "-features examples/testdata/plantfdx.features -annotations examples/testdata/plantfdx.annotations -tree examples/testdata/uniref50_test_tree";
+    System.out.println("CommandLine test " + ++ntest);
     Worker worker = getJalviewDesktopRunner(true, cmds, SETUP_TIMEOUT);
     String ln = null;
     while ((ln = worker.getOutputReader().readLine()) != null)
@@ -207,8 +208,11 @@ public class CommandLineOperations
     {
       System.err.println(ln);
     }
+
   }
 
+  int ntest = 0;
+
   @BeforeTest(alwaysRun = true)
   public void setUpForCommandLineInputOperations() throws IOException
   {
@@ -247,9 +251,12 @@ public class CommandLineOperations
           String fileName, boolean withAWT, int expectedMinFileSize,
           int timeout)
   {
-    String cmd = harg + type + " " + fileName;
-    // System.out.println(">>>>>>>>>>>>>>>> Command : " + cmd);
     File file = new File(fileName);
+    String cmd = harg + type + " "
+            + file.getAbsolutePath().replace('\\', '/');
+    System.out.println(">>>>>>>>>>>>>>>> Command : " + cmd);
+
+    file.deleteOnExit();
     Worker worker = getJalviewDesktopRunner(withAWT, cmd, timeout);
     assertNotNull(worker, "worker is null");
     String msg = "Didn't create an output" + type + " file.[" + harg + "]";