X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FCommandLineOperations.java;h=a539f78cdf891448a2687ba58f6c99ce7752e450;hb=f2bb3db094696bb382ecb8d08913c1b5dc293b53;hp=ace18685366b623f8b224b87b71e9629c66ac6c0;hpb=b74e75812b411ed8838f2c57d84fa1b328bbefe5;p=jalview.git

diff --git a/test/jalview/bin/CommandLineOperations.java b/test/jalview/bin/CommandLineOperations.java
index ace1868..a539f78 100644
--- a/test/jalview/bin/CommandLineOperations.java
+++ b/test/jalview/bin/CommandLineOperations.java
@@ -29,6 +29,8 @@ import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStreamReader;
+import java.nio.file.Path;
+import java.nio.file.Paths;
 import java.util.ArrayList;
 
 import org.testng.Assert;
@@ -39,6 +41,7 @@ import org.testng.annotations.DataProvider;
 import org.testng.annotations.Test;
 
 import io.github.classgraph.ClassGraph;
+import io.github.classgraph.ModuleRef;
 import io.github.classgraph.ScanResult;
 
 public class CommandLineOperations
@@ -51,7 +54,7 @@ public class CommandLineOperations
     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
   }
 
-  private static final int TEST_TIMEOUT = 9000; // Note longer timeout needed
+  private static final int TEST_TIMEOUT = 10500; // Note longer timeout needed
                                                 // on
                                                 // full test run than on
                                                 // individual tests
@@ -124,6 +127,10 @@ public class CommandLineOperations
 
   private static String classpath = null;
 
+  private static String modules = null;
+
+  private static String java_exe = null;
+
   public synchronized static String getClassPath()
   {
     if (scanner == null)
@@ -131,6 +138,14 @@ public class CommandLineOperations
       scanner = new ClassGraph();
       ScanResult scan = scanner.scan();
       classpath = scan.getClasspath();
+      modules = "";
+      for (ModuleRef mr : scan.getModules())
+      {
+        modules.concat(mr.getName());
+      }
+      java_exe = System.getProperty("java.home") + File.separator + "bin"
+              + File.separator + "java";
+
     }
     while (classpath == null)
     {
@@ -151,8 +166,12 @@ public class CommandLineOperations
     // Note: JAL-3065 - don't include quotes for lib/* because the arguments are
     // not expanded by the shell
     String classpath = getClassPath();
-    String _cmd = "java " + (withAwt ? "-Djava.awt.headless=true" : "")
-            + " -classpath " + classpath + " jalview.bin.Jalview ";
+    String _cmd = java_exe + " "
+            + (withAwt ? "-Djava.awt.headless=true" : "")
+            + " -classpath " + classpath
+            + (modules.length() > 2 ? "--add-modules=\"" + modules + "\""
+                    : "")
+            + " jalview.bin.Jalview ";
     Process ls2_proc = null;
     Worker worker = null;
     try
@@ -183,6 +202,20 @@ public class CommandLineOperations
     return worker;
   }
 
+  @Test(groups = { "Functional" })
+  public void reportCurrentWorkingDirectory()
+  {
+    try
+    {
+      Path currentRelativePath = Paths.get("");
+      String s = currentRelativePath.toAbsolutePath().toString();
+      System.out.println("Test CWD is " + s);
+    } catch (Exception q)
+    {
+      q.printStackTrace();
+    }
+  }
+
   @BeforeTest(alwaysRun = true)
   public void initialize()
   {
@@ -220,7 +253,7 @@ public class CommandLineOperations
     {
       System.out.println(ln);
       successfulCMDs.add(ln);
-      if (++count > 5)
+      if (++count > 25)
       {
         break;
       }
@@ -303,53 +336,58 @@ public class CommandLineOperations
   @DataProvider(name = "headlessModeOutputOperationsData")
   public static Object[][] getHeadlessModeOutputParams()
   {
+    // JBPNote: I'm not clear why need to specify full path for output file
+    // when running tests on build server, but we will keep this patch for now
+    // since it works.
+    // https://issues.jalview.org/browse/JAL-1889?focusedCommentId=21609&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-21609
+    String workingDir = "test/jalview/bin/";
     return new Object[][] { { "nodisplay -open examples/uniref50.fa",
-        " -eps", "test/jalview/bin/test_uniref50_out.eps", true,
+        " -eps", workingDir + "test_uniref50_out.eps", true,
         MINFILESIZE_BIG, TEST_TIMEOUT },
         { "nodisplay -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", false,
+            workingDir + "test_uniref50_out.eps", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "nogui -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.eps", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "nogui -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", false,
+            workingDir + "test_uniref50_out.eps", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -eps",
-            "test/jalview/bin/test_uniref50_out.eps", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.eps", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -svg",
-            "test/jalview/bin/test_uniref50_out.svg", false,
+            workingDir + "test_uniref50_out.svg", false,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -png",
-            "test/jalview/bin/test_uniref50_out.png", true, MINFILESIZE_BIG,
+            workingDir + "test_uniref50_out.png", true, MINFILESIZE_BIG,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -html",
-            "test/jalview/bin/test_uniref50_out.html", true,
+            workingDir + "test_uniref50_out.html", true,
             MINFILESIZE_BIG, TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -fasta",
-            "test_uniref50_out.mfa", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.mfa", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -clustal",
-            "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -msf",
-            "test_uniref50_out.msf", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.msf", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pileup",
-            "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.aln", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pir",
-            "test_uniref50_out.pir", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.pir", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -pfam",
-            "test_uniref50_out.pfam", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.pfam", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -blc",
-            "test_uniref50_out.blc", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.blc", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT },
         { "headless -open examples/uniref50.fa", " -jalview",
-            "test_uniref50_out.jvp", true, MINFILESIZE_SMALL,
+            workingDir + "test_uniref50_out.jvp", true, MINFILESIZE_SMALL,
             TEST_TIMEOUT }, };
   }
 }