X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FCommandsTest.java;fp=test%2Fjalview%2Fbin%2FCommandsTest.java;h=7b427371a7a6909c634ae4ae58fc83d9d6668fca;hb=ac7c83b360752f04362700dcd279b5524a559da9;hp=c4fbddb21cc5a9ffa6b6a39469693655c88b66f4;hpb=6e58e6086a2e92fb3ffa66206134c489e2fc26ba;p=jalview.git

diff --git a/test/jalview/bin/CommandsTest.java b/test/jalview/bin/CommandsTest.java
index c4fbddb..7b42737 100644
--- a/test/jalview/bin/CommandsTest.java
+++ b/test/jalview/bin/CommandsTest.java
@@ -116,7 +116,8 @@ public class CommandsTest
   }
   */
 
-  @Test(groups = { "Functional", "testTask3" }, dataProvider = "cmdLines")
+  @Test(groups = { "Functional", "testTask3" }, dataProvider = "cmdLines", singleThreaded = true)
+
   public void commandsOpenTest(String cmdLine, boolean cmdArgs,
           int numFrames, String[] sequences)
   {
@@ -168,7 +169,7 @@ public class CommandsTest
   @Test(
     groups =
     { "Functional", "testTask3" },
-    dataProvider = "structureImageOutputFiles")
+    dataProvider = "structureImageOutputFiles",    singleThreaded = true)
   public void structureImageOutputTest(String cmdLine, String[] filenames)
           throws IOException
   {
@@ -190,13 +191,17 @@ public class CommandsTest
         Assert.assertTrue(Files.size(file.toPath()) > 0, "File '" + filename
                 + "' has no content from '" + cmdLine + "'");
         // make sure the successive output files get bigger!
-		if (lastFile != null) {
-			Assert.assertTrue(Files.size(file.toPath()) > Files.size(lastFile.toPath()));
-			System.out.println("this file: " + file + " +" + Files.size(file.toPath()) + " greater than "
-					+ Files.size(lastFile.toPath()));
-		}
-		// remember it for next file
-		lastFile = file;
+        if (lastFile != null)
+        {
+          waitForLastWrite(file,25);
+          
+          if (Files.size(file.toPath()) > Files
+                  .size(lastFile.toPath()))
+          Assert.assertTrue(Files.size(file.toPath()) > Files
+                  .size(lastFile.toPath()));
+        }
+        // remember it for next file
+        lastFile = file;
       }
     } catch (Exception x)
     {
@@ -209,7 +214,22 @@ public class CommandsTest
     }
   }
 
-  @Test(groups = "Functional", dataProvider = "argfileOutputFiles")
+  private static long waitForLastWrite(File file, int i) throws IOException
+  {
+    long lastSize,stableSize =Files.size(file.toPath());
+    // wait around until we are sure the file has been completely written.
+    do {
+      lastSize = stableSize;
+      try {
+        Thread.sleep(i);
+      } catch (Exception x) {}
+      stableSize=Files.size(file.toPath());
+    } while (stableSize!=lastSize);
+    return stableSize;
+  }
+
+  @Test(groups = "Functional", dataProvider = "argfileOutputFiles", singleThreaded = true)
+
   public void argFilesGlobAndSubstitutionsTest(String cmdLine,
           String[] filenames) throws IOException
   {