X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FcommandsTest2.argfile1;h=ea3a1beb58629e1831d753dd7aa8b05b0c7a00f4;hb=31aca2e9990ff33e088faa41419bb60014a6fbcf;hp=a9c602dcf5c9d47e52a3c2ab2e1c6ff2215e630d;hpb=0788111a588187a04dd0d254d70b055274cf2c9d;p=jalview.git

diff --git a/test/jalview/bin/commandsTest2.argfile1 b/test/jalview/bin/commandsTest2.argfile1
index a9c602d..ea3a1be 100644
--- a/test/jalview/bin/commandsTest2.argfile1
+++ b/test/jalview/bin/commandsTest2.argfile1
@@ -1,12 +1,9 @@
---debug
---nonews
---nosplash
 --substitutions
---open=examples/test_fab41.result/sample.a2m
---annotations
---ssannotations
---colour=gecos:flower
---structure=[viewer=jmol;tempfac=plddt;paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--append=examples/test_fab41.result/sample.a2m
+--showannotations
+--showssannotations
+--colour=gecos-flower
+--structure=[viewer=jmol,tempfac=plddt,paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
 --structureviewer=jmol
 --paematrix={dirname}/test_fab41_unrelaxed_rank_2_model_4_scores.json