X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fbin%2FcommandsTest2.argfile2;h=1afc69ce27c3c8d6642926c1cdd925e747061eac;hb=e4c2a9483a41740a85c95ffbf014e23f9afe79f6;hp=d057858fcfdbb5dab3dfbff582c24e7deec13d62;hpb=0788111a588187a04dd0d254d70b055274cf2c9d;p=jalview.git

diff --git a/test/jalview/bin/commandsTest2.argfile2 b/test/jalview/bin/commandsTest2.argfile2
index d057858..1afc69c 100644
--- a/test/jalview/bin/commandsTest2.argfile2
+++ b/test/jalview/bin/commandsTest2.argfile2
@@ -2,11 +2,11 @@
 --nonews
 --nosplash
 --substitutions
---open=examples/test_fab41.result/sample.a2m
---noannotations
---nossannotations
---colour=gecos:flower
---structure=[tempfac=plddt;paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
+--append=examples/test_fab41.result/sample.a2m
+--noshowannotations
+--noshowssannotations
+--colour=gecos-flower
+--structure=[tempfac=plddt,paematrix={dirname}/test_fab41_unrelaxed_rank_1_model_3_scores.json]{dirname}/test_fab41_unrelaxed_rank_1_model_3.pdb
 --structureviewer=none
 --structure={dirname}/test_fab41_unrelaxed_rank_2_model_4.pdb
 --structureviewer=jmol
@@ -16,7 +16,7 @@
 --structureviewer=jmol
 --paematrix={dirname}/test_fab41_unrelaxed_rank_3_model_2_scores.json
 --tempfac=plddt
---structure=[viewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
+--structure=[structureviewer=none]{dirname}/test_fab41_unrelaxed_rank_4_model_5.pdb
 --paematrix={dirname}/test_fab41_unrelaxed_rank_4_model_5_scores.json
 --tempfac=plddt
 --structure={dirname}/test_fab41_unrelaxed_rank_5_model_1.pdb