X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FAlignedCodonFrameTest.java;h=9694a3e1a992b37908a122bb67e13171c0418453;hb=d6b7c22da593c31a31a4c466b746a0a3e2f6ca02;hp=e782cef004583aa4e84db064bf488ba04225add4;hpb=10ff37d2cb03f342ddbed679951d3e2fef0a404b;p=jalview.git

diff --git a/test/jalview/datamodel/AlignedCodonFrameTest.java b/test/jalview/datamodel/AlignedCodonFrameTest.java
index e782cef..9694a3e 100644
--- a/test/jalview/datamodel/AlignedCodonFrameTest.java
+++ b/test/jalview/datamodel/AlignedCodonFrameTest.java
@@ -76,10 +76,16 @@ public class AlignedCodonFrameTest
     final Sequence aseq2 = new Sequence("Seq2", "-LY-");
     aseq2.createDatasetSequence();
 
+    /*
+     * First with no mappings
+     */
     AlignedCodonFrame acf = new AlignedCodonFrame();
 
     assertNull(acf.getMappedRegion(seq1, aseq1, 1));
 
+    /*
+     * Set up the mappings for the exons (upper-case bases)
+     */
     MapList map = new MapList(new int[]
     { 2, 4, 6, 6, 8, 9 }, new int[]
     { 1, 2 }, 3, 1);
@@ -98,6 +104,9 @@ public class AlignedCodonFrameTest
     assertEquals("[5, 5, 7, 8]",
             Arrays.toString(acf.getMappedRegion(seq2, aseq2, 2)));
 
+    /*
+     * No mapping from sequence 1 to sequence 2
+     */
     assertNull(acf.getMappedRegion(seq1, aseq2, 1));
   }
 }