X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FAlignmentTest.java;h=1c27420c21aea5abd091c0e7542b708782dfbc0c;hb=e8b8c8601ccdc2fdb2093c5228c071d14182004f;hp=4b1f7e98dbe2345e9512bb8e2a0e0b2f633f5988;hpb=a059dd46fe149a476bd274562cd27b2dc7d390dd;p=jalview.git

diff --git a/test/jalview/datamodel/AlignmentTest.java b/test/jalview/datamodel/AlignmentTest.java
index 4b1f7e9..1c27420 100644
--- a/test/jalview/datamodel/AlignmentTest.java
+++ b/test/jalview/datamodel/AlignmentTest.java
@@ -1578,4 +1578,28 @@ public class AlignmentTest
     a.getHiddenColumns().hideColumns(2, 5);
     assertEquals(5, a.getVisibleWidth());
   }
+
+  @Test(groups = { "Functional" })
+  public void testGetContactMap()
+  {
+    // TODO
+    // 1. test adding/removing/manipulating contact maps with/without associated
+    // sequence(s) or groups
+    // 2. For sequence associated - ensure that inserting a gap in sequence
+    // results in the contact map being relocated accordingly
+    // 3. RENDERER QUESTION - should contact maps reflect gaps in the alignment
+    // ?
+
+  }
+
+  @Test(groups = { "Functional" })
+  public void testEquals()
+  {
+    SequenceI seq1 = new Sequence("seq1", "ABCDEF--");
+    SequenceI seq2 = new Sequence("seq2", "-JKLMNO--");
+    SequenceI seq3 = new Sequence("seq2", "-PQR");
+    AlignmentI a = new Alignment(new SequenceI[] { seq1, seq2, seq3 });
+    a.setDataset(null);
+    assertEquals(a.getDataset(), a.getDataset());
+  }
 }