X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FDBRefEntryTest.java;h=87e7082bcbb18989f25162d4c735d90e92727988;hb=d4b4cffe60c2fc80b7f9a56aa9c497f8077d6bed;hp=ee0bd4187a3839f324e19bab8bd1986da051a0b5;hpb=d240900df4c81bd7b054afc0f569c7a75d4e1751;p=jalview.git

diff --git a/test/jalview/datamodel/DBRefEntryTest.java b/test/jalview/datamodel/DBRefEntryTest.java
index ee0bd41..87e7082 100644
--- a/test/jalview/datamodel/DBRefEntryTest.java
+++ b/test/jalview/datamodel/DBRefEntryTest.java
@@ -81,7 +81,7 @@ public class DBRefEntryTest
     assertTrue(ref1.updateFrom(ref2));
     assertEquals("UNIPROT", ref1.getSource()); // unchanged
     assertEquals("V71633", ref1.getAccessionId()); // unchanged
-  
+
     /*
      * ref1 has no mapping, acquires mapping from ref2
      */
@@ -140,80 +140,80 @@ public class DBRefEntryTest
   }
 
   @Test(groups = { "Functional" })
-  public void testIsPrimary()
+  public void testIsPrimaryCandidate()
   {
     DBRefEntry dbr = new DBRefEntry(DBRefSource.UNIPROT, "", "Q12345");
-    assertTrue(dbr.isPrimary());
+    assertTrue(dbr.isPrimaryCandidate());
 
     /*
      *  1:1 mapping - ok
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 3 }, new int[] { 1, 3 }, 1,
             1));
-    assertTrue(dbr.isPrimary());
+    assertTrue(dbr.isPrimaryCandidate());
 
     /*
      *  1:1 mapping of identical split ranges - not ok
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 3, 6, 9 }, new int[] { 1,
         3, 6, 9 }, 1, 1));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
 
     /*
      *  1:1 mapping of different ranges - not ok
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 4 }, new int[] { 2, 5 }, 1,
             1));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
 
     /*
      *  1:1 mapping of 'isoform' ranges - not ok
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 2, 6, 9 }, new int[] { 1,
         3, 7, 9 }, 1, 1));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
     dbr.setMap(null);
-    assertTrue(dbr.isPrimary());
+    assertTrue(dbr.isPrimaryCandidate());
 
     /*
      * Version string is prefixed with another dbref source string (fail)
      */
     dbr.setVersion(DBRefSource.EMBL + ":0");
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
 
     /*
      * Version string is alphanumeric
      */
     dbr.setVersion("0.1.b");
-    assertTrue(dbr.isPrimary());
+    assertTrue(dbr.isPrimaryCandidate());
 
     /*
      * null version string can't be primary ref
      */
     dbr.setVersion(null);
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
     dbr.setVersion("");
-    assertTrue(dbr.isPrimary());
+    assertTrue(dbr.isPrimaryCandidate());
 
     /*
      *  1:1 mapping and sequenceRef (fail)
      */
     dbr.setMap(new Mapping(new Sequence("foo", "ASDF"), new int[] { 1, 3 },
             new int[] { 1, 3 }, 1, 1));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
 
     /*
      * 1:3 mapping (fail)
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 3 }, new int[] { 1, 3 }, 1,
             3));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
 
     /*
      * 2:2 mapping with shift (expected fail, but maybe use case for a pass)
      */
     dbr.setMap(new Mapping(null, new int[] { 1, 4 }, new int[] { 1, 4 }, 2,
             2));
-    assertFalse(dbr.isPrimary());
+    assertFalse(dbr.isPrimaryCandidate());
   }
 }