X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FHiddenSequencesTest.java;h=11b993dcd349e97382c68849e7e3acec7b28f2ed;hb=08c7bee16c16563cc7cec7ea4d336b3e0c4c937a;hp=779598808f8622ef88748c6e4006c20770d1686b;hpb=6d183feafe3e566501af586286bbd1d2107ee5a9;p=jalview.git

diff --git a/test/jalview/datamodel/HiddenSequencesTest.java b/test/jalview/datamodel/HiddenSequencesTest.java
index 7795988..11b993d 100644
--- a/test/jalview/datamodel/HiddenSequencesTest.java
+++ b/test/jalview/datamodel/HiddenSequencesTest.java
@@ -181,7 +181,8 @@ public class HiddenSequencesTest
   {
     AlignmentI al = new Alignment(seqs);
     HiddenSequences hs = al.getHiddenSequences();
-    for (int i = 0; i < SEQ_COUNT; i++)
+    int height = al.getHeight();
+    for (int i = 0; i < height; i++)
     {
       assertEquals(i, hs.findIndexWithoutHiddenSeqs(i));
     }
@@ -194,7 +195,7 @@ public class HiddenSequencesTest
     /*
      * alignment is now seq0/2/3/4/7/8/9
      */
-    assertEquals(SEQ_COUNT - 3, al.getHeight());
+    assertEquals(height - 3, al.getHeight());
     assertEquals(0, hs.findIndexWithoutHiddenSeqs(0));
     assertEquals(0, hs.findIndexWithoutHiddenSeqs(1));
     assertEquals(1, hs.findIndexWithoutHiddenSeqs(2));
@@ -205,6 +206,19 @@ public class HiddenSequencesTest
     assertEquals(4, hs.findIndexWithoutHiddenSeqs(7));
     assertEquals(5, hs.findIndexWithoutHiddenSeqs(8));
     assertEquals(6, hs.findIndexWithoutHiddenSeqs(9));
+
+    /*
+     * hide first two sequences
+     */
+    hs.showAll(null);
+    hs.hideSequence(seqs[0]);
+    hs.hideSequence(seqs[1]);
+    assertEquals(-1, hs.findIndexWithoutHiddenSeqs(0));
+    assertEquals(-1, hs.findIndexWithoutHiddenSeqs(1));
+    for (int i = 2; i < height; i++)
+    {
+      assertEquals(i - 2, hs.findIndexWithoutHiddenSeqs(i));
+    }
   }
 
   /**