X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FMappingTest.java;h=0bf753d999126b5b048f39d616246954a2e0443b;hb=refs%2Fheads%2Fpatch%2FJAL-4062_sort_and_merge_contiguousregions;hp=3131ad76141e7152599d755932884fa511e6dc15;hpb=d6eb02943c3388257841b208e1fb65bd4c0be3b7;p=jalview.git

diff --git a/test/jalview/datamodel/MappingTest.java b/test/jalview/datamodel/MappingTest.java
index 3131ad7..0bf753d 100644
--- a/test/jalview/datamodel/MappingTest.java
+++ b/test/jalview/datamodel/MappingTest.java
@@ -21,11 +21,14 @@
 package jalview.datamodel;
 
 import static org.testng.AssertJUnit.assertEquals;
+import static org.testng.AssertJUnit.assertSame;
 
+import jalview.gui.JvOptionPane;
 import jalview.util.MapList;
 
 import java.util.Arrays;
 
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 /**
@@ -33,6 +36,14 @@ import org.testng.annotations.Test;
  */
 public class MappingTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /**
    * trite test of the intersectVisContigs method for a simple DNA -> Protein
    * exon map and a range of visContigs
@@ -40,11 +51,13 @@ public class MappingTest
   @Test(groups = { "Functional" })
   public void testIntersectVisContigs()
   {
-    MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] {
-        1, 7 }, 3, 1);
+    MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 },
+            new int[]
+            { 1, 7 }, 3, 1);
     Mapping m = new Mapping(fk);
-    Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(),
-        fk.getFromHighest() });
+    Mapping m_1 = m
+            .intersectVisContigs(new int[]
+            { fk.getFromLowest(), fk.getFromHighest() });
     Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 });
 
     // assertions from output values 'as is', not checked for correctness
@@ -75,4 +88,18 @@ public class MappingTest
     m = new Mapping(seq, fk);
     assertEquals("[ [1, 6] [8, 13] ] 3:1 to [ [4, 7] ] Seq1", m.toString());
   }
+
+  @Test(groups = { "Functional" })
+  public void testCopyConstructor()
+  {
+    MapList ml = new MapList(new int[] { 1, 6, 8, 13 }, new int[] { 4, 7 },
+            3, 1);
+    SequenceI seq = new Sequence("seq1", "agtacg");
+    Mapping m = new Mapping(seq, ml);
+    m.setMappedFromId("abc");
+    Mapping copy = new Mapping(m);
+    assertEquals("abc", copy.getMappedFromId());
+    assertEquals(ml, copy.getMap());
+    assertSame(seq, copy.getTo());
+  }
 }