X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FMappingTest.java;h=f8d3db1f0174cc673b1c63b45152882f23fdfb3d;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=378d7086df31e266b494113d794cc076b493ced8;hpb=c93b9ad2ebfab4cad4608a8890132918589576be;p=jalview.git diff --git a/test/jalview/datamodel/MappingTest.java b/test/jalview/datamodel/MappingTest.java index 378d708..f8d3db1 100644 --- a/test/jalview/datamodel/MappingTest.java +++ b/test/jalview/datamodel/MappingTest.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) + * Copyright (C) 2015 The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.datamodel; import static org.testng.AssertJUnit.assertEquals; @@ -17,21 +37,18 @@ public class MappingTest * trite test of the intersectVisContigs method for a simple DNA -> Protein * exon map and a range of visContigs */ - @Test + @Test(groups = { "Functional" }) public void testIntersectVisContigs() { - MapList fk = new MapList(new int[] - { 1, 6, 8, 13, 15, 23 }, new int[] - { 1, 7 }, 3, 1); + MapList fk = new MapList(new int[] { 1, 6, 8, 13, 15, 23 }, new int[] { + 1, 7 }, 3, 1); Mapping m = new Mapping(fk); - Mapping m_1 = m.intersectVisContigs(new int[] - { fk.getFromLowest(), fk.getFromHighest() }); - Mapping m_2 = m.intersectVisContigs(new int[] - { 1, 7, 11, 20 }); + Mapping m_1 = m.intersectVisContigs(new int[] { fk.getFromLowest(), + fk.getFromHighest() }); + Mapping m_2 = m.intersectVisContigs(new int[] { 1, 7, 11, 20 }); // assertions from output values 'as is', not checked for correctness - String result = Arrays.deepToString(m_1.map.getFromRanges() - .toArray()); + String result = Arrays.deepToString(m_1.map.getFromRanges().toArray()); System.out.println(result); assertEquals("[[1, 6], [8, 13], [15, 23]]", result);