X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FResidueCountTest.java;h=696ed767c16b6811ddc6929b8dc18249226eddda;hb=4a59f639cf5769d9ec66142ebecfa4961c5d3b04;hp=e879e33637e873b3e0e936029504daaf7fb4a465;hpb=0a5ce6145bb76fc7eb8a5cc2670e20453fbedd29;p=jalview.git

diff --git a/test/jalview/datamodel/ResidueCountTest.java b/test/jalview/datamodel/ResidueCountTest.java
index e879e33..696ed76 100644
--- a/test/jalview/datamodel/ResidueCountTest.java
+++ b/test/jalview/datamodel/ResidueCountTest.java
@@ -1,17 +1,48 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.datamodel;
 
+import java.util.Locale;
+
 import static org.testng.Assert.assertEquals;
 import static org.testng.Assert.assertFalse;
 import static org.testng.Assert.assertTrue;
 
-import jalview.datamodel.ResidueCount;
 import jalview.datamodel.ResidueCount.SymbolCounts;
+import jalview.gui.JvOptionPane;
 
 import org.junit.Assert;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class ResidueCountTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   /**
    * Test a mix of add and put for nucleotide counting
    */
@@ -56,13 +87,25 @@ public class ResidueCountTest
     rc.add('-');
     rc.add('.');
     rc.add(' ');
-    
+
     assertEquals(rc.getGapCount(), 4);
     assertEquals(rc.getCount(' '), 4);
     assertEquals(rc.getCount('-'), 4);
     assertEquals(rc.getCount('.'), 4);
     assertFalse(rc.isUsingOtherData());
     assertFalse(rc.isCountingInts());
+
+    rc.set(ResidueCount.GAP_COUNT, Short.MAX_VALUE - 2);
+    assertEquals(rc.getGapCount(), Short.MAX_VALUE - 2);
+    assertFalse(rc.isCountingInts());
+    rc.addGap();
+    assertEquals(rc.getGapCount(), Short.MAX_VALUE - 1);
+    assertFalse(rc.isCountingInts());
+    rc.addGap();
+    assertEquals(rc.getGapCount(), Short.MAX_VALUE);
+    rc.addGap();
+    assertTrue(rc.isCountingInts());
+    assertEquals(rc.getGapCount(), Short.MAX_VALUE + 1);
   }
 
   @Test(groups = "Functional")
@@ -140,7 +183,7 @@ public class ResidueCountTest
     ResidueCount rc = new ResidueCount(false);
     // expected characters (upper or lower case):
     String aas = "ACDEFGHIKLMNPQRSTVWXY";
-    String lower = aas.toLowerCase();
+    String lower = aas.toLowerCase(Locale.ROOT);
     for (int i = 0; i < aas.length(); i++)
     {
       rc.put(aas.charAt(i), i);
@@ -165,7 +208,7 @@ public class ResidueCountTest
     ResidueCount rc = new ResidueCount(true);
     // expected characters (upper or lower case):
     String nucs = "ACGTUN";
-    String lower = nucs.toLowerCase();
+    String lower = nucs.toLowerCase(Locale.ROOT);
     for (int i = 0; i < nucs.length(); i++)
     {
       rc.put(nucs.charAt(i), i);
@@ -243,7 +286,7 @@ public class ResidueCountTest
     rc.add('P');
     assertEquals(rc.getResiduesForCount(Short.MAX_VALUE + 1), "P");
     assertEquals(rc.getResiduesForCount(1), "C");
-  
+
     // modal count is in the 'other data' counts
     rc = new ResidueCount();
     rc.add('Q');
@@ -374,12 +417,20 @@ public class ResidueCountTest
       rc.add('K');
     }
     rc.add('F');
-    
+
+    /*
+     * percentages are rounded (0.5 rounded up)
+     * 10/40 9/40 7/40 6/40 1/40
+     */
     assertEquals(rc.getTooltip(40, 0),
-            "P 25%; W 22%; C 17%; Q 17%; K 15%; F 2%");
+            "P 25%; W 23%; C 18%; Q 18%; K 15%; F 3%");
 
+    rc.add('Q');
+    /*
+     * 10/30 9/30 8/30 7/30 6/30 1/30
+     */
     assertEquals(rc.getTooltip(30, 1),
-            "P 33.3%; W 30.0%; C 23.3%; Q 23.3%; K 20.0%; F 3.3%");
+            "P 33.3%; W 30.0%; Q 26.7%; C 23.3%; K 20.0%; F 3.3%");
   }
 
   @Test(groups = "Functional")