X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FSequenceFeatureTest.java;h=673ea290a7e74ca7c1de3e7d04fc56e528060624;hb=5a631296dd1dcc1df7b50487a647c27333696c74;hp=2774a16c031e5fe0087c55c63223da3610f06e54;hpb=4eb8d7a0f14e5dd1dc5ad5ad0960bae9b25fa043;p=jalview.git

diff --git a/test/jalview/datamodel/SequenceFeatureTest.java b/test/jalview/datamodel/SequenceFeatureTest.java
index 2774a16..673ea29 100644
--- a/test/jalview/datamodel/SequenceFeatureTest.java
+++ b/test/jalview/datamodel/SequenceFeatureTest.java
@@ -26,11 +26,11 @@ import static org.testng.AssertJUnit.assertNull;
 import static org.testng.AssertJUnit.assertSame;
 import static org.testng.AssertJUnit.assertTrue;
 
-import jalview.gui.JvOptionPane;
-
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
+import jalview.gui.JvOptionPane;
+
 public class SequenceFeatureTest
 {
 
@@ -278,13 +278,14 @@ public class SequenceFeatureTest
   public void testGetDetailsReport()
   {
     SequenceI seq = new Sequence("TestSeq", "PLRFQMD");
+    String seqName = seq.getName();
 
     // single locus, no group, no score
     SequenceFeature sf = new SequenceFeature("variant", "G,C", 22, 22, null);
     String expected = "<br><table><tr><td>Location</td><td>TestSeq</td><td>22</td></tr>"
             + "<tr><td>Type</td><td>variant</td><td></td></tr>"
             + "<tr><td>Description</td><td>G,C</td><td></td></tr></table>";
-    assertEquals(expected, sf.getDetailsReport(seq));
+    assertEquals(expected, sf.getDetailsReport(seqName, null));
 
     // contact feature
     sf = new SequenceFeature("Disulphide Bond", "a description", 28, 31,
@@ -292,7 +293,7 @@ public class SequenceFeatureTest
     expected = "<br><table><tr><td>Location</td><td>TestSeq</td><td>28:31</td></tr>"
             + "<tr><td>Type</td><td>Disulphide Bond</td><td></td></tr>"
             + "<tr><td>Description</td><td>a description</td><td></td></tr></table>";
-    assertEquals(expected, sf.getDetailsReport(seq));
+    assertEquals(expected, sf.getDetailsReport(seqName, null));
 
     sf = new SequenceFeature("variant", "G,C", 22, 33,
             12.5f, "group");
@@ -305,7 +306,7 @@ public class SequenceFeatureTest
             + "<tr><td>Group</td><td>group</td><td></td></tr>"
             + "<tr><td>Child</td><td></td><td>ENSP002</td></tr>"
             + "<tr><td>Parent</td><td></td><td>ENSG001</td></tr></table>";
-    assertEquals(expected, sf.getDetailsReport(seq));
+    assertEquals(expected, sf.getDetailsReport(seqName, null));
 
     /*
      * feature with embedded html link in description
@@ -316,6 +317,6 @@ public class SequenceFeatureTest
             + "<tr><td>Type</td><td>Pfam</td><td></td></tr>"
             + "<tr><td>Description</td><td>Fer2 Status: True Positive <a href=\"http://pfam.xfam.org/family/PF00111\">Pfam 8_8</a></td><td></td></tr>"
             + "<tr><td>Group</td><td>Uniprot</td><td></td></tr></table>";
-    assertEquals(expected, sf.getDetailsReport(seq));
+    assertEquals(expected, sf.getDetailsReport(seqName, null));
   }
 }