X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FSequenceFeatureTest.java;h=cd8f9eb5bc415837a026e5514fcb02e7910d9a55;hb=e9a1285c3e0df3505d85121d84c2d33d899820f2;hp=9111e5ac2720320bbf39e594216e665a3c6d0957;hpb=3027bfb4b1b13af8686abcd419888e03141bd672;p=jalview.git
diff --git a/test/jalview/datamodel/SequenceFeatureTest.java b/test/jalview/datamodel/SequenceFeatureTest.java
index 9111e5a..cd8f9eb 100644
--- a/test/jalview/datamodel/SequenceFeatureTest.java
+++ b/test/jalview/datamodel/SequenceFeatureTest.java
@@ -277,43 +277,46 @@ public class SequenceFeatureTest
@Test(groups = { "Functional" })
public void testGetDetailsReport()
{
+ SequenceI seq = new Sequence("TestSeq", "PLRFQMD");
+ String seqName = seq.getName();
+
// single locus, no group, no score
SequenceFeature sf = new SequenceFeature("variant", "G,C", 22, 22, null);
- String expected = "
Type | variant | |
"
- + "Start/end | 22 | |
"
+ String expected = "
Location | TestSeq | 22 |
"
+ + "Type | variant | |
"
+ "Description | G,C | |
";
- assertEquals(expected, sf.getDetailsReport());
+ assertEquals(expected, sf.getDetailsReport(seqName));
// contact feature
sf = new SequenceFeature("Disulphide Bond", "a description", 28, 31,
null);
- expected = "
Type | Disulphide Bond | |
"
- + "Start/end | 28:31 | |
"
+ expected = "
Location | TestSeq | 28:31 |
"
+ + "Type | Disulphide Bond | |
"
+ "Description | a description | |
";
- assertEquals(expected, sf.getDetailsReport());
+ assertEquals(expected, sf.getDetailsReport(seqName));
sf = new SequenceFeature("variant", "G,C", 22, 33,
12.5f, "group");
sf.setValue("Parent", "ENSG001");
sf.setValue("Child", "ENSP002");
- expected = "
Type | variant | |
"
- + "Start/end | 22-33 | |
"
+ expected = "
Location | TestSeq | 22-33 |
"
+ + "Type | variant | |
"
+ "Description | G,C | |
"
+ "Score | 12.5 | |
"
+ "Group | group | |
"
+ "Child | | ENSP002 |
"
+ "Parent | | ENSG001 |
";
- assertEquals(expected, sf.getDetailsReport());
+ assertEquals(expected, sf.getDetailsReport(seqName));
/*
* feature with embedded html link in description
*/
String desc = "Fer2 Status: True Positive Pfam 8_8";
sf = new SequenceFeature("Pfam", desc, 8, 83, "Uniprot");
- expected = "
Type | Pfam | |
"
- + "Start/end | 8-83 | |
"
+ expected = "
Location | TestSeq | 8-83 |
"
+ + "Type | Pfam | |
"
+ "Description | Fer2 Status: True Positive Pfam 8_8 | |
"
+ "Group | Uniprot | |
";
- assertEquals(expected, sf.getDetailsReport());
+ assertEquals(expected, sf.getDetailsReport(seqName));
}
}