X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fdatamodel%2FSequenceTest.java;h=a52f0a2fe654cbb23f54392b054dacf39be0c0b3;hb=7d722306ebba9a2d6562849c598a91d867f7d00e;hp=08e6f7d057e4852f2eb1f647cabc23386fcc3d9c;hpb=5f4e1e4c330b045e9c8bce28ee132a0fca3834d8;p=jalview.git

diff --git a/test/jalview/datamodel/SequenceTest.java b/test/jalview/datamodel/SequenceTest.java
index 08e6f7d..a52f0a2 100644
--- a/test/jalview/datamodel/SequenceTest.java
+++ b/test/jalview/datamodel/SequenceTest.java
@@ -35,6 +35,7 @@ import jalview.util.MapList;
 import java.io.File;
 import java.util.ArrayList;
 import java.util.Arrays;
+import java.util.BitSet;
 import java.util.List;
 import java.util.Vector;
 
@@ -74,6 +75,18 @@ public class SequenceTest
     assertEquals("Gap interval 1 end wrong", 4, gapInt.get(0)[1]);
     assertEquals("Gap interval 2 start wrong", 6, gapInt.get(1)[0]);
     assertEquals("Gap interval 2 end wrong", 8, gapInt.get(1)[1]);
+
+    BitSet gapfield = aseq.getInsertionsAsBits();
+    BitSet expectedgaps = new BitSet();
+    expectedgaps.set(2, 5);
+    expectedgaps.set(6, 9);
+
+    assertEquals(6, expectedgaps.cardinality());
+
+    assertEquals("getInsertionsAsBits didn't mark expected number of gaps",
+            6, gapfield.cardinality());
+
+    assertEquals("getInsertionsAsBits not correct.", expectedgaps, gapfield);
   }
 
   @Test(groups = ("Functional"))