X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblCdnaTest.java;h=d2559ae0df0a113fd4f71b00a0647ce11e6a50d8;hb=5504c1347eb582d05ae9086608223209ecb8c13d;hp=9e9d9a422673456b7cb7e4bfe35c7810ace63501;hpb=7d455171bbd58d050fc9fc95bffc3a3b0cf60166;p=jalview.git diff --git a/test/jalview/ext/ensembl/EnsemblCdnaTest.java b/test/jalview/ext/ensembl/EnsemblCdnaTest.java index 9e9d9a4..d2559ae 100644 --- a/test/jalview/ext/ensembl/EnsemblCdnaTest.java +++ b/test/jalview/ext/ensembl/EnsemblCdnaTest.java @@ -20,6 +20,8 @@ */ package jalview.ext.ensembl; +import java.util.Locale; + import static org.testng.AssertJUnit.assertEquals; import static org.testng.AssertJUnit.assertFalse; import static org.testng.AssertJUnit.assertNull; @@ -209,20 +211,21 @@ public class EnsemblCdnaTest String accId = "ABC123"; EnsemblCdna testee = new EnsemblCdna(); - SequenceFeature sf = new SequenceFeature("transcript", "", 20000, - 20500, 0f, null); + SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500, + 0f, null); assertFalse(testee.retainFeature(sf, accId)); sf = new SequenceFeature("aberrant_processed_transcript", "", 20000, 20500, 0f, null); assertFalse(testee.retainFeature(sf, accId)); - sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500, - 0f, null); + sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500, 0f, + null); assertFalse(testee.retainFeature(sf, accId)); // other feature with no parent is retained - sf = new SequenceFeature("sequence_variant", "", 20000, 20500, 0f, null); + sf = new SequenceFeature("sequence_variant", "", 20000, 20500, 0f, + null); assertTrue(testee.retainFeature(sf, accId)); // other feature with desired parent is retained @@ -230,7 +233,7 @@ public class EnsemblCdnaTest assertTrue(testee.retainFeature(sf, accId)); // test is not case-sensitive - assertTrue(testee.retainFeature(sf, accId.toLowerCase())); + assertTrue(testee.retainFeature(sf, accId.toLowerCase(Locale.ROOT))); // feature with wrong parent is not retained sf.setValue("Parent", "XYZ");