X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblCdsTest.java;h=183f9336147ea26c483f72ac2a28c86f23787480;hb=e24933a537e0f640c75d4685c468615872bc77fc;hp=fb17845c0ec73c0d982f444d03840c350e7b31ce;hpb=3e16aae83055354f09b0f9560686d035a5f2e5aa;p=jalview.git

diff --git a/test/jalview/ext/ensembl/EnsemblCdsTest.java b/test/jalview/ext/ensembl/EnsemblCdsTest.java
index fb17845..183f933 100644
--- a/test/jalview/ext/ensembl/EnsemblCdsTest.java
+++ b/test/jalview/ext/ensembl/EnsemblCdsTest.java
@@ -13,6 +13,7 @@ import jalview.util.MapList;
 
 import java.util.List;
 
+import org.testng.Assert;
 import org.testng.annotations.AfterClass;
 import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
@@ -151,4 +152,17 @@ public class EnsemblCdsTest
     assertFalse(testee.identifiesSequence(sf, accId));
   }
 
+  @Test(groups = "Functional")
+  public void testIsValidReference() throws Exception
+  {
+    EnsemblSequenceFetcher esq = new EnsemblCds();
+    Assert.assertTrue(esq.isValidReference("CCDS5863.1"));
+    Assert.assertTrue(esq.isValidReference("ENST00000288602"));
+    Assert.assertTrue(esq.isValidReference("ENSG00000288602"));
+    Assert.assertTrue(esq.isValidReference("ENSP00000288602"));
+    Assert.assertFalse(esq.isValidReference("ENST0000288602"));
+    // non-human species have a 3 character identifier included:
+    Assert.assertTrue(esq.isValidReference("ENSMUSG00000099398"));
+  }
+
 }