X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblGenomeTest.java;h=5515c057d1ce1d6957178e3ce7826d5480c02c79;hb=d043ce47fc710d3eb2629ba926a8a7417bd67d8c;hp=0a9cc644effd9d21d68d18c8bd840d9173716506;hpb=49db0dff1da16c3355b43a41498c1fc93ef47e91;p=jalview.git

diff --git a/test/jalview/ext/ensembl/EnsemblGenomeTest.java b/test/jalview/ext/ensembl/EnsemblGenomeTest.java
index 0a9cc64..5515c05 100644
--- a/test/jalview/ext/ensembl/EnsemblGenomeTest.java
+++ b/test/jalview/ext/ensembl/EnsemblGenomeTest.java
@@ -75,8 +75,8 @@ public class EnsemblGenomeTest
     String transcriptId = "ABC123";
 
     // transcript at (start+10000) length 501
-    SequenceFeature sf = new SequenceFeature("transcript", "", 20000,
-            20500, 0f, null);
+    SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500,
+            0f, null);
     sf.setValue("id", transcriptId);
     sf.setStrand("+");
     genomic.addSequenceFeature(sf);
@@ -89,8 +89,8 @@ public class EnsemblGenomeTest
 
     // Ensembl treats NMD_transcript_variant as if transcript
     // although strictly it is a sequence_variant in SO
-    sf = new SequenceFeature("NMD_transcript_variant", "", 11000, 12000,
-            0f, null);
+    sf = new SequenceFeature("NMD_transcript_variant", "", 11000, 12000, 0f,
+            null);
     sf.setValue("id", transcriptId);
     sf.setStrand("+");
     genomic.addSequenceFeature(sf);
@@ -133,16 +133,16 @@ public class EnsemblGenomeTest
     String accId = "ABC123";
     EnsemblGenome testee = new EnsemblGenome();
 
-    SequenceFeature sf = new SequenceFeature("transcript", "", 20000,
-            20500, 0f, null);
+    SequenceFeature sf = new SequenceFeature("transcript", "", 20000, 20500,
+            0f, null);
     assertFalse(testee.retainFeature(sf, accId));
 
     sf = new SequenceFeature("mature_transcript", "", 20000, 20500, 0f,
             null);
     assertFalse(testee.retainFeature(sf, accId));
 
-    sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500,
-            0f, null);
+    sf = new SequenceFeature("NMD_transcript_variant", "", 20000, 20500, 0f,
+            null);
     assertFalse(testee.retainFeature(sf, accId));
 
     // other feature with no parent is kept