X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblSeqProxyTest.java;h=a4d6d92b98964e6ab8afc925a1b9e5b9f8dee7e1;hb=6200addf078b7f7ace90597dc056dafc7fc602c1;hp=27008f5581fb83569c3bfdacda77ab87e0dc4549;hpb=4b1c969e87feaefd4fb9c49ba3d6b828b3ce1a9c;p=jalview.git diff --git a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java index 27008f5..a4d6d92 100644 --- a/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java +++ b/test/jalview/ext/ensembl/EnsemblSeqProxyTest.java @@ -21,12 +21,10 @@ package jalview.ext.ensembl; import static org.testng.AssertJUnit.assertEquals; -import static org.testng.AssertJUnit.assertSame; import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; -import jalview.datamodel.features.SequenceFeatures; import jalview.gui.JvOptionPane; import jalview.io.DataSourceType; import jalview.io.FastaFile; @@ -34,8 +32,6 @@ import jalview.io.gff.SequenceOntologyFactory; import jalview.io.gff.SequenceOntologyLite; import java.lang.reflect.Method; -import java.util.Arrays; -import java.util.List; import org.testng.Assert; import org.testng.annotations.AfterClass; @@ -223,7 +219,6 @@ public class EnsemblSeqProxyTest SequenceFeature sf = new SequenceFeature("sequence_variant", alleles, 1, 2, 0f, null); sf.setValue("alleles", alleles); - sf.setAttributes("x=y,z;alleles=" + alleles + ";a=b,c"); EnsemblSeqProxy.reverseComplementAlleles(sf); String revcomp = "G,C,GTA-,HGMD_MUTATION,gtc"; @@ -231,7 +226,5 @@ public class EnsemblSeqProxyTest assertEquals(revcomp, sf.getDescription()); // verify alleles attribute is updated with reverse complement assertEquals(revcomp, sf.getValue("alleles")); - // verify attributes string is updated with reverse complement - assertEquals("x=y,z;alleles=" + revcomp + ";a=b,c", sf.getAttributes()); } }