X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fensembl%2FEnsemblXrefTest.java;h=07f889210f2fe93f32ffa13a4b6c21ab35b5ca7e;hb=e7e676ca075c5b2832be98b4544364e5d6adc4c1;hp=df1c1adfd9a051980af1cf05cc70aaa46a85fabd;hpb=6c43dd36929855a7907380ffb36b4df249d4a557;p=jalview.git

diff --git a/test/jalview/ext/ensembl/EnsemblXrefTest.java b/test/jalview/ext/ensembl/EnsemblXrefTest.java
index df1c1ad..07f8892 100644
--- a/test/jalview/ext/ensembl/EnsemblXrefTest.java
+++ b/test/jalview/ext/ensembl/EnsemblXrefTest.java
@@ -1,20 +1,50 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.ext.ensembl;
 
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertFalse;
 
 import jalview.datamodel.DBRefEntry;
+import jalview.gui.JvOptionPane;
+import jalview.util.JSONUtils;
 
-import java.io.BufferedReader;
 import java.io.IOException;
-import java.io.StringReader;
 import java.net.URL;
 import java.util.List;
 
+import org.json.simple.parser.ParseException;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 public class EnsemblXrefTest
 {
+
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   //@formatter:off
   private static final String JSON = 
           "[{\"primary_id\":\"CCDS5863\",\"dbname\":\"CCDS\"}," +
@@ -31,12 +61,13 @@ public class EnsemblXrefTest
     EnsemblXref testee = new EnsemblXref("http://rest.ensembl.org", dbName,
             dbVers)
     {
-      @Override
-      protected BufferedReader getHttpResponse(URL url, List<String> ids)
-              throws IOException
-      {
-        return new BufferedReader(new StringReader(JSON));
-      }
+      @SuppressWarnings("unchecked")
+	  @Override
+	  protected Object getJSON(URL url, List<String> ids, int msDelay, int mode, String mapKey) throws IOException, ParseException 
+	  {
+    	  return ((List<Object>)JSONUtils.parse(JSON)).iterator();
+	  }
+
     };
 
     // synonyms and GO terms are not returned