X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fjmol%2FPDBFileWithJmolTest.java;h=ae50bdf9030b95e8612eb3216d980754e4bac4dc;hb=b5893211716553a96176a37f7c6e293cd6618559;hp=c9ab6302c7b545fef95ac768050ad8280df87a8e;hpb=ac207fd787051c6e0f4f9f10ea6b94452480d931;p=jalview.git

diff --git a/test/jalview/ext/jmol/PDBFileWithJmolTest.java b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
index c9ab630..ae50bdf 100644
--- a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@ -22,19 +22,22 @@ package jalview.ext.jmol;
 
 import static org.junit.Assert.assertEquals;
 import static org.junit.Assert.assertTrue;
-import jalview.datamodel.Alignment;
-import jalview.datamodel.AlignmentI;
-import jalview.datamodel.SequenceI;
-import jalview.gui.AlignFrame;
-import jalview.io.AppletFormatAdapter;
-import jalview.io.FileLoader;
 
 import java.util.Vector;
 
+import org.junit.Before;
 import org.junit.Test;
 
 import MCview.PDBfile;
 
+import jalview.bin.Cache;
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.SequenceI;
+import jalview.gui.AlignFrame;
+import jalview.io.AppletFormatAdapter;
+import jalview.io.FileLoader;
+
 /**
  * @author jimp
  * 
@@ -47,6 +50,15 @@ public class PDBFileWithJmolTest
   // "./examples/DNMT1_MOUSE.pdb"
   // };
 
+  @Before
+  public void setUp()
+  {
+    Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
+            Boolean.TRUE.toString());
+    Cache.applicationProperties.setProperty("ADD_SS_ANN",
+            Boolean.TRUE.toString());
+  }
+
   @Test
   public void testAlignmentLoader() throws Exception
   {