X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fjmol%2FPDBFileWithJmolTest.java;h=fa3922b3c78c7d7be3bddc37a3a9dabd0d95e90b;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=301c70d35a3c6ca0fbc547c9d6330004fc71139f;hpb=fddf3084802b37e5cee17829e32692a4aac3e60d;p=jalview.git

diff --git a/test/jalview/ext/jmol/PDBFileWithJmolTest.java b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
index 301c70d..fa3922b 100644
--- a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -44,13 +44,13 @@ import MCview.PDBfile;
  */
 public class PDBFileWithJmolTest
 {
-  String[] testFile = new String[]
-  { "./examples/1GAQ.txt", "./test/jalview/ext/jmol/1QCF.pdb" }; // ,
+  String[] testFile = new String[] { "./examples/1GAQ.txt",
+      "./test/jalview/ext/jmol/1QCF.pdb" }; // ,
 
   // "./examples/DNMT1_MOUSE.pdb"
   // };
 
-  @BeforeMethod
+  @BeforeMethod(alwaysRun = true)
   public void setUp()
   {
     Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
@@ -59,7 +59,7 @@ public class PDBFileWithJmolTest
             Boolean.TRUE.toString());
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testAlignmentLoader() throws Exception
   {
     for (String f : testFile)
@@ -71,7 +71,7 @@ public class PDBFileWithJmolTest
     }
   }
 
-  @Test(groups ={ "Functional" })
+  @Test(groups = { "Functional" })
   public void testFileParser() throws Exception
   {
     for (String pdbStr : testFile)
@@ -93,14 +93,12 @@ public class PDBFileWithJmolTest
                 + " to the same sequence as MCView",
                 sq.getSequenceAsString(), mcseqs.remove(0)
                         .getSequenceAsString());
-        AlignmentI al = new Alignment(new SequenceI[]
-        { sq });
+        AlignmentI al = new Alignment(new SequenceI[] { sq });
         validateSecStrRows(al);
       }
     }
   }
 
-
   private void validateSecStrRows(AlignmentI al)
   {
     if (!al.isNucleotide())