X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fjmol%2FPDBFileWithJmolTest.java;h=fa3922b3c78c7d7be3bddc37a3a9dabd0d95e90b;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=87078a938fc8bf7f838216568afe5cddc6433d28;hpb=3412b273e964fb1a9d22564b04a5f0c827ec2461;p=jalview.git

diff --git a/test/jalview/ext/jmol/PDBFileWithJmolTest.java b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
index 87078a9..fa3922b 100644
--- a/test/jalview/ext/jmol/PDBFileWithJmolTest.java
+++ b/test/jalview/ext/jmol/PDBFileWithJmolTest.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -22,11 +22,6 @@ package jalview.ext.jmol;
 
 import static org.testng.AssertJUnit.assertEquals;
 import static org.testng.AssertJUnit.assertTrue;
-import org.testng.annotations.Test;
-import org.testng.annotations.BeforeMethod;
-import java.util.Vector;
-
-import MCview.PDBfile;
 
 import jalview.bin.Cache;
 import jalview.datamodel.Alignment;
@@ -36,19 +31,26 @@ import jalview.gui.AlignFrame;
 import jalview.io.AppletFormatAdapter;
 import jalview.io.FileLoader;
 
+import java.util.Vector;
+
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
+
+import MCview.PDBfile;
+
 /**
  * @author jimp
  * 
  */
 public class PDBFileWithJmolTest
 {
-  String[] testFile = new String[]
-  { "./examples/1GAQ.txt", "./test/jalview/ext/jmol/1QCF.pdb" }; // ,
+  String[] testFile = new String[] { "./examples/1GAQ.txt",
+      "./test/jalview/ext/jmol/1QCF.pdb" }; // ,
 
   // "./examples/DNMT1_MOUSE.pdb"
   // };
 
-  @BeforeMethod
+  @BeforeMethod(alwaysRun = true)
   public void setUp()
   {
     Cache.applicationProperties.setProperty("STRUCT_FROM_PDB",
@@ -57,7 +59,7 @@ public class PDBFileWithJmolTest
             Boolean.TRUE.toString());
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testAlignmentLoader() throws Exception
   {
     for (String f : testFile)
@@ -69,7 +71,7 @@ public class PDBFileWithJmolTest
     }
   }
 
-  @Test
+  @Test(groups = { "Functional" })
   public void testFileParser() throws Exception
   {
     for (String pdbStr : testFile)
@@ -91,14 +93,12 @@ public class PDBFileWithJmolTest
                 + " to the same sequence as MCView",
                 sq.getSequenceAsString(), mcseqs.remove(0)
                         .getSequenceAsString());
-        AlignmentI al = new Alignment(new SequenceI[]
-        { sq });
+        AlignmentI al = new Alignment(new SequenceI[] { sq });
         validateSecStrRows(al);
       }
     }
   }
 
-
   private void validateSecStrRows(AlignmentI al)
   {
     if (!al.isNucleotide())