X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;fp=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=d8582af22815dbb1253ed89100f46a6cd85f2316;hb=44e5428356c618d139354d02bbfc2f9008ae50b6;hp=3365c52ffcf80ec33406dfde87dbdfe54cf670fe;hpb=4740ac2539b6c62c36a0c79ec6880237e50ea3f4;p=jalview.git diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java index 3365c52..d8582af 100644 --- a/test/jalview/ext/paradise/TestAnnotate3D.java +++ b/test/jalview/ext/paradise/TestAnnotate3D.java @@ -20,28 +20,30 @@ */ package jalview.ext.paradise; -import static org.junit.Assert.assertTrue; +import static org.testng.AssertJUnit.assertTrue; + +import jalview.datamodel.AlignmentI; +import jalview.datamodel.SequenceI; +import jalview.io.FastaFile; +import jalview.io.FormatAdapter; import java.io.BufferedReader; import java.io.File; import java.io.Reader; import java.util.Iterator; -import org.junit.Assert; -import org.junit.Test; +import org.testng.Assert; +import org.testng.AssertJUnit; +import org.testng.annotations.Test; import MCview.PDBfile; -import compbio.util.FileUtil; -import jalview.datamodel.AlignmentI; -import jalview.datamodel.SequenceI; -import jalview.io.FastaFile; -import jalview.io.FormatAdapter; +import compbio.util.FileUtil; public class TestAnnotate3D { - @Test + @Test(enabled = false) public void test1GIDbyId() throws Exception { // use same ID as standard tests given at @@ -51,7 +53,7 @@ public class TestAnnotate3D testRNAMLcontent(ids, null); } - @Test + @Test(enabled = false) public void testIdVsContent2GIS() throws Exception { Iterator ids = Annotate3D.getRNAMLForPDBId("2GIS"); @@ -95,7 +97,7 @@ public class TestAnnotate3D * * @throws Exception */ - @Test + @Test(enabled = false) public void testPDBfileVsRNAML() throws Exception { PDBfile pdbf = new PDBfile(true, false, true, "examples/2GIS.pdb", @@ -109,6 +111,7 @@ public class TestAnnotate3D testRNAMLcontent(readers, pdbf); } + @Test(enabled = false) private void testRNAMLcontent(Iterator readers, PDBfile pdbf) throws Exception { @@ -152,7 +155,7 @@ public class TestAnnotate3D } if (struseq == null) { - Assert.fail("Couldn't find this sequence in original input:\n" + AssertJUnit.fail("Couldn't find this sequence in original input:\n" + new FastaFile().print(new SequenceI[] { sq }) + "\n\nOriginal input:\n"