X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=7d0916bd6967ebb229b786415ca24c00c9d8ccd3;hb=e7e676ca075c5b2832be98b4544364e5d6adc4c1;hp=85fc039210839192f24aba36a052b0aa88d8c340;hpb=483e7163b1fb8d4bcb9393014816c944befce328;p=jalview.git diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java index 85fc039..7d0916b 100644 --- a/test/jalview/ext/paradise/TestAnnotate3D.java +++ b/test/jalview/ext/paradise/TestAnnotate3D.java @@ -40,9 +40,8 @@ import org.testng.AssertJUnit; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import MCview.PDBfile; - import compbio.util.FileUtil; +import mc_view.PDBfile; public class TestAnnotate3D { @@ -152,10 +151,10 @@ public class TestAnnotate3D { { SequenceI struseq = null; - String sq_ = new String(sq.getSequence()).toLowerCase(); + String sq_ = sq.getSequenceAsString().toLowerCase(); for (SequenceI _struseq : pdbf.getSeqsAsArray()) { - final String lowerCase = new String(_struseq.getSequence()) + final String lowerCase = _struseq.getSequenceAsString() .toLowerCase(); if (lowerCase.equals(sq_)) {