X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=80fffff5a890420e2a5ab1218bff4eefd693fef1;hb=9d2408483e451285fd555c3cd6e0273977acbaa7;hp=85fc039210839192f24aba36a052b0aa88d8c340;hpb=483e7163b1fb8d4bcb9393014816c944befce328;p=jalview.git diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java index 85fc039..80fffff 100644 --- a/test/jalview/ext/paradise/TestAnnotate3D.java +++ b/test/jalview/ext/paradise/TestAnnotate3D.java @@ -20,6 +20,8 @@ */ package jalview.ext.paradise; +import java.util.Locale; + import static org.testng.AssertJUnit.assertTrue; import jalview.datamodel.AlignmentI; @@ -40,9 +42,8 @@ import org.testng.AssertJUnit; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import MCview.PDBfile; - import compbio.util.FileUtil; +import mc_view.PDBfile; public class TestAnnotate3D { @@ -152,11 +153,11 @@ public class TestAnnotate3D { { SequenceI struseq = null; - String sq_ = new String(sq.getSequence()).toLowerCase(); + String sq_ = sq.getSequenceAsString().toLowerCase(Locale.ROOT); for (SequenceI _struseq : pdbf.getSeqsAsArray()) { - final String lowerCase = new String(_struseq.getSequence()) - .toLowerCase(); + final String lowerCase = _struseq.getSequenceAsString() + .toLowerCase(Locale.ROOT); if (lowerCase.equals(sq_)) { struseq = _struseq;