X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=c6c1a29891ace0ec971596b906bec33b5f04bac7;hb=8886aa756d24c0f1a06f54474298c4c93b0cbccf;hp=3a3b4c2f74e2c228494680b3ff46dd2f290e015d;hpb=4a5137b64f7ec23db2a09290bfcd392984a52150;p=jalview.git

diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java
index 3a3b4c2..c6c1a29 100644
--- a/test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/test/jalview/ext/paradise/TestAnnotate3D.java
@@ -24,6 +24,7 @@ import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 import jalview.io.DataSourceType;
 import jalview.io.FastaFile;
 import jalview.io.FileFormat;
@@ -36,6 +37,7 @@ import java.util.Iterator;
 
 import org.testng.Assert;
 import org.testng.AssertJUnit;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 import MCview.PDBfile;
@@ -45,6 +47,13 @@ import compbio.util.FileUtil;
 public class TestAnnotate3D
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Network" }, enabled = true)
   public void test1GIDbyId() throws Exception
   {
@@ -143,10 +152,10 @@ public class TestAnnotate3D
         {
           {
             SequenceI struseq = null;
-            String sq_ = new String(sq.getSequence()).toLowerCase();
+            String sq_ = sq.getSequenceAsString().toLowerCase();
             for (SequenceI _struseq : pdbf.getSeqsAsArray())
             {
-              final String lowerCase = new String(_struseq.getSequence())
+              final String lowerCase = _struseq.getSequenceAsString()
                       .toLowerCase();
               if (lowerCase.equals(sq_))
               {