X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=c6c1a29891ace0ec971596b906bec33b5f04bac7;hb=d065bc916cb63af83cdab7319f5177a855724aba;hp=c2be67ec89f89c7b83eed2d1444c7dfea7d1b0a2;hpb=ee198b3ca3687f18a2ee186f4e7c7330f4ea30f0;p=jalview.git

diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java
index c2be67e..c6c1a29 100644
--- a/test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/test/jalview/ext/paradise/TestAnnotate3D.java
@@ -24,6 +24,7 @@ import static org.testng.AssertJUnit.assertTrue;
 
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
+import jalview.gui.JvOptionPane;
 import jalview.io.DataSourceType;
 import jalview.io.FastaFile;
 import jalview.io.FileFormat;
@@ -36,6 +37,7 @@ import java.util.Iterator;
 
 import org.testng.Assert;
 import org.testng.AssertJUnit;
+import org.testng.annotations.BeforeClass;
 import org.testng.annotations.Test;
 
 import MCview.PDBfile;
@@ -45,6 +47,13 @@ import compbio.util.FileUtil;
 public class TestAnnotate3D
 {
 
+  @BeforeClass(alwaysRun = true)
+  public void setUpJvOptionPane()
+  {
+    JvOptionPane.setInteractiveMode(false);
+    JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+  }
+
   @Test(groups = { "Network" }, enabled = true)
   public void test1GIDbyId() throws Exception
   {
@@ -143,10 +152,10 @@ public class TestAnnotate3D
         {
           {
             SequenceI struseq = null;
-            String sq_ = new String(sq.getSequence()).toLowerCase();
+            String sq_ = sq.getSequenceAsString().toLowerCase();
             for (SequenceI _struseq : pdbf.getSeqsAsArray())
             {
-              final String lowerCase = new String(_struseq.getSequence())
+              final String lowerCase = _struseq.getSequenceAsString()
                       .toLowerCase();
               if (lowerCase.equals(sq_))
               {
@@ -158,11 +167,11 @@ public class TestAnnotate3D
             {
               AssertJUnit
                       .fail("Couldn't find this sequence in original input:\n"
-                              + new FastaFile()
-                                      .print(new SequenceI[] { sq })
+                              + new FastaFile().print(
+                                      new SequenceI[] { sq }, true)
                               + "\n\nOriginal input:\n"
-                              + new FastaFile().print(pdbf.getSeqsAsArray())
-                              + "\n");
+                              + new FastaFile().print(
+                                      pdbf.getSeqsAsArray(), true) + "\n");
             }
           }
         }