X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Fparadise%2FTestAnnotate3D.java;h=e2b6e0ffbcefe19f20f95b802891cca392212670;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=126c22196b02d24014450b1fb71ab89669bfa581;hpb=ab22918ab8fc67d30dad1fb1ae0f37e51f49df95;p=jalview.git

diff --git a/test/jalview/ext/paradise/TestAnnotate3D.java b/test/jalview/ext/paradise/TestAnnotate3D.java
index 126c221..e2b6e0f 100644
--- a/test/jalview/ext/paradise/TestAnnotate3D.java
+++ b/test/jalview/ext/paradise/TestAnnotate3D.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -43,8 +43,7 @@ import compbio.util.FileUtil;
 public class TestAnnotate3D
 {
 
-  @Test(groups =
-  { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = false)
   public void test1GIDbyId() throws Exception
   {
     // use same ID as standard tests given at
@@ -54,8 +53,7 @@ public class TestAnnotate3D
     testRNAMLcontent(ids, null);
   }
 
-  @Test(groups =
-  { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = false)
   public void testIdVsContent2GIS() throws Exception
   {
     Iterator<Reader> ids = Annotate3D.getRNAMLForPDBId("2GIS");
@@ -99,8 +97,7 @@ public class TestAnnotate3D
    * 
    * @throws Exception
    */
-  @Test(groups =
-  { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = false)
   public void testPDBfileVsRNAML() throws Exception
   {
     PDBfile pdbf = new PDBfile(true, false, true, "examples/2GIS.pdb",
@@ -114,8 +111,7 @@ public class TestAnnotate3D
     testRNAMLcontent(readers, pdbf);
   }
 
-  @Test(groups =
-  { "Functional" }, enabled = false)
+  @Test(groups = { "Functional" }, enabled = false)
   private void testRNAMLcontent(Iterator<Reader> readers, PDBfile pdbf)
           throws Exception
   {
@@ -149,9 +145,9 @@ public class TestAnnotate3D
             String sq_ = new String(sq.getSequence()).toLowerCase();
             for (SequenceI _struseq : pdbf.getSeqsAsArray())
             {
-              final String lowerCase = new String(_struseq.getSequence()).toLowerCase();
-              if (lowerCase.equals(
-                      sq_))
+              final String lowerCase = new String(_struseq.getSequence())
+                      .toLowerCase();
+              if (lowerCase.equals(sq_))
               {
                 struseq = _struseq;
                 break;
@@ -159,11 +155,13 @@ public class TestAnnotate3D
             }
             if (struseq == null)
             {
-              AssertJUnit.fail("Couldn't find this sequence in original input:\n"
-                      + new FastaFile().print(new SequenceI[]
-                      { sq })
-                      + "\n\nOriginal input:\n"
-                      + new FastaFile().print(pdbf.getSeqsAsArray()) + "\n");
+              AssertJUnit
+                      .fail("Couldn't find this sequence in original input:\n"
+                              + new FastaFile()
+                                      .print(new SequenceI[] { sq })
+                              + "\n\nOriginal input:\n"
+                              + new FastaFile().print(pdbf.getSeqsAsArray())
+                              + "\n");
             }
           }
         }