X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fext%2Frbvi%2Fchimera%2FChimeraXCommandsTest.java;fp=test%2Fjalview%2Fext%2Frbvi%2Fchimera%2FChimeraXCommandsTest.java;h=03bfbcd19c783cccecaa31de874d956188c54feb;hb=3459a8a691cb22508d7067f240b7254e588e77d3;hp=143a5d8bf5d48f9413269f3eec42917275a0d54f;hpb=5b27f1062b2203c4c31702e205f4c78e1992063e;p=jalview.git

diff --git a/test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java b/test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java
index 143a5d8..03bfbcd 100644
--- a/test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java
+++ b/test/jalview/ext/rbvi/chimera/ChimeraXCommandsTest.java
@@ -188,7 +188,7 @@ public class ChimeraXCommandsTest
     toAlign.addRange("2", 20, 21, "B");
     toAlign.addRange("2", 22, 22, "C");
     List<StructureCommandI> command = testee.superposeStructures(ref,
-            toAlign,AtomSpecType.ALPHA);
+            toAlign, AtomSpecType.ALPHA);
     assertEquals(command.size(), 1);
     String cmd = command.get(0).getCommand();
     String refSpec = "#1/A:12-14/B:18,22-23";
@@ -208,16 +208,19 @@ public class ChimeraXCommandsTest
   public void testGetAtomSpec()
   {
     AtomSpecModel model = new AtomSpecModel();
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY
-            ), "");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "");
     model.addRange("1", 2, 4, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "#1/A:2-4");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "#1/A:2-4");
     model.addRange("1", 8, 8, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "#1/A:2-4,8");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "#1/A:2-4,8");
     model.addRange("1", 5, 7, "B");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "#1/A:2-4,8/B:5-7");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "#1/A:2-4,8/B:5-7");
     model.addRange("1", 3, 5, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY), "#1/A:2-5,8/B:5-7");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
+            "#1/A:2-5,8/B:5-7");
     model.addRange("0", 1, 4, "B");
     assertEquals(testee.getAtomSpec(model, AtomSpecType.RESIDUE_ONLY),
             "#0/B:1-4|#1/A:2-5,8/B:5-7");
@@ -244,13 +247,17 @@ public class ChimeraXCommandsTest
     AtomSpecModel model = new AtomSpecModel();
     assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA), "");
     model.addRange("1", 2, 4, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA), "#1/A:2-4@CA");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA),
+            "#1/A:2-4@CA");
     model.addRange("1", 8, 8, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA), "#1/A:2-4,8@CA");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA),
+            "#1/A:2-4,8@CA");
     model.addRange("1", 5, 7, "B");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA), "#1/A:2-4,8/B:5-7@CA");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA),
+            "#1/A:2-4,8/B:5-7@CA");
     model.addRange("1", 3, 5, "A");
-    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA), "#1/A:2-5,8/B:5-7@CA");
+    assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA),
+            "#1/A:2-5,8/B:5-7@CA");
     model.addRange("0", 1, 4, "B");
     assertEquals(testee.getAtomSpec(model, AtomSpecType.ALPHA),
             "#0/B:1-4@CA|#1/A:2-5,8/B:5-7@CA");
@@ -309,8 +316,8 @@ public class ChimeraXCommandsTest
   @Test(groups = "Functional")
   public void testGetColourCommand()
   {
-    assertEquals(testee.colourResidues("something", Color.MAGENTA)
-            .getCommand(),
+    assertEquals(
+            testee.colourResidues("something", Color.MAGENTA).getCommand(),
             "color something #ff00ff");
   }
 
@@ -321,8 +328,7 @@ public class ChimeraXCommandsTest
     model.addRange("1", 89, 92, "A");
     model.addRange("2", 12, 20, "B");
     model.addRange("2", 8, 9, "B");
-    assertEquals(testee.setAttribute("jv_kd", "27.3", model)
-            .getCommand(),
+    assertEquals(testee.setAttribute("jv_kd", "27.3", model).getCommand(),
             "setattr #1/A:89-92|#2/B:8-9,12-20 res jv_kd '27.3' create true");
   }
 
@@ -344,8 +350,10 @@ public class ChimeraXCommandsTest
   {
     List<StructureCommandI> cmds = testee.startNotifications("to here");
     assertEquals(cmds.size(), 2);
-    assertEquals(cmds.get(0), new StructureCommand("info notify start models jalview prefix ModelChanged url to here"));
-    assertEquals(cmds.get(1), new StructureCommand("info notify start selection jalview prefix SelectionChanged url to here"));
+    assertEquals(cmds.get(0), new StructureCommand(
+            "info notify start models jalview prefix ModelChanged url to here"));
+    assertEquals(cmds.get(1), new StructureCommand(
+            "info notify start selection jalview prefix SelectionChanged url to here"));
   }
 
   @Test(groups = "Functional")
@@ -353,8 +361,10 @@ public class ChimeraXCommandsTest
   {
     List<StructureCommandI> cmds = testee.stopNotifications();
     assertEquals(cmds.size(), 2);
-    assertEquals(cmds.get(0), new StructureCommand("info notify stop models jalview"));
-    assertEquals(cmds.get(1), new StructureCommand("info notify stop selection jalview"));
+    assertEquals(cmds.get(0),
+            new StructureCommand("info notify stop models jalview"));
+    assertEquals(cmds.get(1),
+            new StructureCommand("info notify stop selection jalview"));
   }
 
   @Test(groups = "Functional")