X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignFrameTest.java;h=568d285c6be70abeee7861f9d089cd40149cfcbc;hb=14bfc6fb57f123b815f08dbf5b35544abd33b3af;hp=68f02826f9d6d018398ec4defc4b7ba5a3ad483c;hpb=2648baffe71899ac8aaeebeb344e651cadbcdc75;p=jalview.git

diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java
index 68f0282..568d285 100644
--- a/test/jalview/gui/AlignFrameTest.java
+++ b/test/jalview/gui/AlignFrameTest.java
@@ -66,6 +66,9 @@ public class AlignFrameTest
   {
     JvOptionPane.setInteractiveMode(false);
     JvOptionPane.setMockResponse(JvOptionPane.CANCEL_OPTION);
+
+    // BH 2020.03.22 solved the assertEquals(c, i_faded) problem below
+    Jalview.setSynchronous(true);
   }
 
   @Test(groups = "Functional")
@@ -158,7 +161,6 @@ public class AlignFrameTest
      * use read-only test properties file
      */
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
-    Cache.setPropertyNoSave("SHOW_JWS2_SERVICES", Boolean.FALSE.toString());
     Jalview.main(new String[] { "-nonews" });
   }
 
@@ -176,7 +178,7 @@ public class AlignFrameTest
   public void setUp()
   {
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
-    Cache.setPropertyNoSave("SHOW_IDENTITY",
+    Cache.getInstance().applicationProperties.setProperty("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
@@ -342,7 +344,6 @@ public class AlignFrameTest
   @Test(groups = "Functional")
   public void testColourThresholdActions()
   {
-
     AlignViewport av = af.getViewport();
     AlignmentI al = av.getAlignment();
 
@@ -376,12 +377,7 @@ public class AlignFrameTest
     SliderPanel sp = SliderPanel.getSliderPanel();
     assertTrue(sp.isForConservation());
     assertEquals(sp.getValue(), 30); // initial slider setting
-
-    // BH 2019.08.28 this was necessary so that rs was updated
-    af.changeColour_actionPerformed(JalviewColourScheme.Helix.toString());
-
     sp.valueChanged(10);
-
     assertSame(rs, av.getResidueShading());
     c = rs.findColour('I', 14, ferCapan);
     Color i_faded = new Color(196, 186, 196);
@@ -506,21 +502,6 @@ public class AlignFrameTest
     assertEquals(c, s_original);
   }
 
-  private void waitSome()
-  {
-
-    // just a hack
-    synchronized (this)
-    {
-      try
-      {
-        wait(250);
-      } catch (InterruptedException e)
-      {
-      }
-    }
-  }
-
   /**
    * Verify that making a New View transfers alignment and group colour schemes,
    * including any thresholds, to the new view. Because New View is performed by