X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignFrameTest.java;h=af9c045f993e8e20c45e18f4e1cdb814a8dbaf8b;hb=e3f8846ad3af97c5b26e09f7a4e3bcc901f758ca;hp=fed5992fec0b6c0a0571656c1120bd57e3caef4b;hpb=14985603cea28569e295ddabb219da8034f1c7b2;p=jalview.git

diff --git a/test/jalview/gui/AlignFrameTest.java b/test/jalview/gui/AlignFrameTest.java
index fed5992..af9c045 100644
--- a/test/jalview/gui/AlignFrameTest.java
+++ b/test/jalview/gui/AlignFrameTest.java
@@ -86,12 +86,12 @@ public class AlignFrameTest
     assertFalse(alignFrame.hideFeatureColumns("exon", true));
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
     assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
-            .getHiddenRegions()
+            .getHiddenColumnsCopy()
             .isEmpty());
     assertFalse(alignFrame.hideFeatureColumns("exon", false));
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
     assertTrue(alignFrame.getViewport().getAlignment().getHiddenColumns()
-            .getHiddenRegions()
+            .getHiddenColumnsCopy()
             .isEmpty());
 
     /*
@@ -101,7 +101,7 @@ public class AlignFrameTest
     assertTrue(alignFrame.getViewport().getColumnSelection().isEmpty());
     List<int[]> hidden = alignFrame.getViewport().getAlignment()
             .getHiddenColumns()
-            .getHiddenRegions();
+            .getHiddenColumnsCopy();
     assertTrue(hidden.isEmpty());
 
     /*
@@ -111,7 +111,7 @@ public class AlignFrameTest
      */
     assertTrue(alignFrame.hideFeatureColumns("Turn", true));
     hidden = alignFrame.getViewport().getAlignment().getHiddenColumns()
-            .getHiddenRegions();
+            .getHiddenColumnsCopy();
     assertEquals(hidden.size(), 2);
     assertEquals(hidden.get(0)[0], 1);
     assertEquals(hidden.get(0)[1], 3);
@@ -544,10 +544,11 @@ public class AlignFrameTest
     assertEquals(af.alignPanel.getViewName(), "View 1");
     AlignViewport av2 = af.getViewport();
     assertNotSame(av, av2);
+    assertSame(av2, af.alignPanel.av);
     rs = av2.getResidueShading();
     assertNotSame(av.getResidueShading(), rs);
     assertEquals(rs.getThreshold(), 10);
-    assertTrue(rs.conservationApplied());
+    assertTrue(rs.conservationApplied(), rs.toString());
     assertEquals(rs.getConservationInc(), 20);
     assertEquals(av2.getAlignment().getGroups().size(), 1);
     sg = av2.getAlignment().getGroups().get(0);