X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignViewportTest.java;h=1da65041917f09e340683eae0a302e8b4b43ce9a;hb=eb3e681d6e82ccdd5d312d1981dfb306e7f479f0;hp=7399c665f63a18cb2a10fba2bbda7b13dcb2d7f1;hpb=cb31e23d9138e481479623374aed7767bf8934d2;p=jalview.git

diff --git a/test/jalview/gui/AlignViewportTest.java b/test/jalview/gui/AlignViewportTest.java
index 7399c66..1da6504 100644
--- a/test/jalview/gui/AlignViewportTest.java
+++ b/test/jalview/gui/AlignViewportTest.java
@@ -539,29 +539,34 @@ public class AlignViewportTest
     assertEquals(0, ranges.getStartSeq());
     assertEquals(2, ranges.getEndSeq());
   }
-  @Test(groups = {"Functional"})
+
+  @Test(groups = { "Functional" })
   public void testGetSelectionAsNewSequences_withContactMatrices()
   {
-    SequenceI seq = new Sequence("seq","ACADA");
+    SequenceI seq = new Sequence("seq", "ACADA");
     ContactMatrixI cmat = new SeqDistanceContactMatrix(5);
     seq.addContactList(cmat);
-    Alignment al = new Alignment(new SequenceI[] {seq.deriveSequence() });
+    Alignment al = new Alignment(new SequenceI[] { seq.deriveSequence() });
     al.addAnnotation(al.getSequenceAt(0).getAnnotation()[0]);
-    AlignFrame af = new AlignFrame(al,500,500);
-    
+    AlignFrame af = new AlignFrame(al, 500, 500);
+
     SequenceI selseqs[] = af.getViewport().getSelectionAsNewSequence();
     assertNotNull(selseqs[0].getAnnotation());
     assertNotNull(selseqs[0].getAnnotation()[0]);
-    assertEquals(cmat,selseqs[0].getContactMatrixFor(selseqs[0].getAnnotation()[0]));
-    
-    assertNotNull(selseqs[0].getContactListFor(selseqs[0].getAnnotation()[0], 2));
-    
+    assertEquals(cmat,
+            selseqs[0].getContactMatrixFor(selseqs[0].getAnnotation()[0]));
+
+    assertNotNull(
+            selseqs[0].getContactListFor(selseqs[0].getAnnotation()[0], 2));
+
     // now select everything and test again
     af.selectAllSequenceMenuItem_actionPerformed(null);
     selseqs = af.getViewport().getSelectionAsNewSequence();
     assertNotNull(selseqs[0].getAnnotation());
     assertNotNull(selseqs[0].getAnnotation()[0]);
-    assertEquals(cmat,selseqs[0].getContactMatrixFor(selseqs[0].getAnnotation()[0]));
-    assertNotNull(selseqs[0].getContactListFor(selseqs[0].getAnnotation()[0], 2));
+    assertEquals(cmat,
+            selseqs[0].getContactMatrixFor(selseqs[0].getAnnotation()[0]));
+    assertNotNull(
+            selseqs[0].getContactListFor(selseqs[0].getAnnotation()[0], 2));
   }
 }