X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignViewportTest.java;h=b2286e006b51b06aa99a8aeb5debafe895fda7e9;hb=5602a9c0504dd5849e3ce69814907f6b1a77f660;hp=4660842760352cbf6ee510820f6b72a263899436;hpb=3f91bb1385ab9ac8fdd15e3bc9378f5b554e1642;p=jalview.git

diff --git a/test/jalview/gui/AlignViewportTest.java b/test/jalview/gui/AlignViewportTest.java
index 4660842..b2286e0 100644
--- a/test/jalview/gui/AlignViewportTest.java
+++ b/test/jalview/gui/AlignViewportTest.java
@@ -46,6 +46,7 @@ import jalview.schemes.ColourSchemeI;
 import jalview.schemes.PIDColourScheme;
 import jalview.structure.StructureSelectionManager;
 import jalview.util.MapList;
+import jalview.viewmodel.ViewportRanges;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -450,6 +451,65 @@ public class AlignViewportTest
     }
     ;
     Assert.assertEquals(c, 1, "Expected to find one occupancy row.");
+  }
 
+  @Test(groups = { "Functional" })
+  public void testGetConsensusSeq()
+  {
+    /*
+     * A-C
+     * A-C
+     * A-D
+     * --D
+     * consensus expected to be A-C
+     */
+    String fasta = ">s1\nA-C\n>s2\nA-C\n>s3\nA-D\n>s4\n--D\n";
+    AlignFrame af = new FileLoader().LoadFileWaitTillLoaded(fasta,
+            DataSourceType.PASTE);
+    AlignViewport testme = af.getViewport();
+    SequenceI cons = testme.getConsensusSeq();
+    assertEquals("A-C", cons.getSequenceAsString());
+  }
+
+  @Test(groups = { "Functional" })
+  public void testHideRevealSequences()
+  {
+    ViewportRanges ranges = testee.getRanges();
+    assertEquals(3, al.getHeight());
+    assertEquals(0, ranges.getStartSeq());
+    assertEquals(2, ranges.getEndSeq());
+
+    /*
+     * hide first sequence
+     */
+    testee.hideSequence(new SequenceI[] { al.getSequenceAt(0) });
+    assertEquals(2, al.getHeight());
+    assertEquals(0, ranges.getStartSeq());
+    assertEquals(1, ranges.getEndSeq());
+
+    /*
+     * reveal hidden sequences above the first
+     */
+    testee.showSequence(0);
+    assertEquals(3, al.getHeight());
+    assertEquals(0, ranges.getStartSeq());
+    assertEquals(2, ranges.getEndSeq());
+
+    /*
+     * hide first and third sequences
+     */
+    testee.hideSequence(new SequenceI[] { al.getSequenceAt(0),
+        al.getSequenceAt(2) });
+    assertEquals(1, al.getHeight());
+    assertEquals(0, ranges.getStartSeq());
+    assertEquals(0, ranges.getEndSeq());
+
+    /*
+     * reveal all hidden sequences
+     */
+    testee.showAllHiddenSeqs();
+    assertEquals(3, al.getHeight());
+    assertEquals(0, ranges.getStartSeq());
+    assertEquals(2, ranges.getEndSeq());
   }
 }