X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignmentPanelTest.java;h=80dc939bcc2b4214333c63026fd7ff1fdae00323;hb=47c64ce8c5ba2ceef956af72290f58a7a23fa8b2;hp=e84b87ae7cef861cdd83f13f773fa7f1b8decdb7;hpb=4e77e758e10a6b83902b3cc21a669da8bcd0dc8f;p=jalview.git

diff --git a/test/jalview/gui/AlignmentPanelTest.java b/test/jalview/gui/AlignmentPanelTest.java
index e84b87a..80dc939 100644
--- a/test/jalview/gui/AlignmentPanelTest.java
+++ b/test/jalview/gui/AlignmentPanelTest.java
@@ -31,6 +31,8 @@ import jalview.io.DataSourceType;
 import jalview.io.FileLoader;
 import jalview.viewmodel.ViewportRanges;
 
+import java.lang.reflect.InvocationTargetException;
+
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
@@ -131,15 +133,17 @@ public class AlignmentPanelTest
   AlignFrame af;
 
   @BeforeMethod(alwaysRun = true)
-  public void setUp()
+  public void setUp() throws InvocationTargetException, InterruptedException
   {
     Jalview.main(new String[] { "-nonews", "-props",
         "test/jalview/testProps.jvprops" });
 
-    Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+    Cache.setPropertyNoSave("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
+    
+    af.paintImmediately(af.getBounds());
 
     /*
      * wait for Consensus thread to complete
@@ -150,7 +154,7 @@ public class AlignmentPanelTest
       {
         try
         {
-          wait(50);
+          wait(250); // BH was 50
         } catch (InterruptedException e)
         {
         }
@@ -164,7 +168,7 @@ public class AlignmentPanelTest
    * or without hidden columns
    */
   @Test(groups = "Functional")
-  public void TestSetScrollValues()
+  public void testSetScrollValues()
   {
     ViewportRanges ranges = af.getViewport().getRanges();
     af.alignPanel.setScrollValues(0, 0);
@@ -189,6 +193,8 @@ public class AlignmentPanelTest
     int scrollpos = 60;
     af.getViewport().hideColumns(30, 50);
     af.alignPanel.setScrollValues(scrollpos, 5);
+
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), oldres + scrollpos);
 
     // scroll to position within hidden columns, still sets endres to oldres +
@@ -206,6 +212,7 @@ public class AlignmentPanelTest
     scrollpos = 130;
     af.getViewport().showAllHiddenColumns();
     af.alignPanel.setScrollValues(scrollpos, 5);
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1);
 
@@ -214,6 +221,7 @@ public class AlignmentPanelTest
     // endRes should be set to width of alignment - 1 - the number of hidden
     // columns
     af.getViewport().hideColumns(30, 50);
+    af.paintImmediately(af.getBounds());
     af.alignPanel.setScrollValues(scrollpos, 5);
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1 - 21); // 21 is the number of hidden
@@ -225,25 +233,47 @@ public class AlignmentPanelTest
    * when switching from wrapped back to unwrapped mode (JAL-2739)
    */
   @Test(groups = "Functional")
-  public void TestUpdateLayout_endRes()
+  public void testUpdateLayout_endRes()
   {
     // get details of original alignment dimensions
     ViewportRanges ranges = af.getViewport().getRanges();
     int endres = ranges.getEndRes();
 
+    // System.out.println("APT range end0 " + ranges.getEndRes());
     // wrap
     af.alignPanel.getAlignViewport().setWrapAlignment(true);
     af.alignPanel.updateLayout();
-
+    af.paintImmediately(af.getBounds());
+    waitSome();
+    // System.out.println("APT range end1 " + ranges.getEndRes());
     // endRes has changed
     assertNotEquals(ranges.getEndRes(), endres);
 
     // unwrap
     af.alignPanel.getAlignViewport().setWrapAlignment(false);
     af.alignPanel.updateLayout();
+    waitSome();
+    af.paintImmediately(af.getBounds());
+
+    // System.out.println("APT range end3 " + ranges.getEndRes());
 
     // endRes back to original value
     assertEquals(ranges.getEndRes(), endres);
 
   }
+
+  private void waitSome()
+  {
+
+    // just a hack
+    synchronized (this)
+    {
+      try
+      {
+        wait(250);
+      } catch (InterruptedException e)
+      {
+      }
+    }
+  }
 }