X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignmentPanelTest.java;h=c1896bce26e2c87224968cb917e8220c9b43b0cd;hb=279c6495df1a0de231600a2d283098c7411c4730;hp=a6bce20dee816922ba54216366ab2a2c7310ca9c;hpb=8df2de111af18978bb5254650cab7ba28bc84e82;p=jalview.git

diff --git a/test/jalview/gui/AlignmentPanelTest.java b/test/jalview/gui/AlignmentPanelTest.java
index a6bce20..c1896bc 100644
--- a/test/jalview/gui/AlignmentPanelTest.java
+++ b/test/jalview/gui/AlignmentPanelTest.java
@@ -50,22 +50,26 @@ public class AlignmentPanelTest
   @BeforeMethod(alwaysRun = true)
   public void setUp() throws InvocationTargetException, InterruptedException
   {
-    Jalview.main(new String[] { "-nonews", "-props",
-        "test/jalview/testProps.jvprops" });
+    Jalview.main(
+            new String[]
+            { "-nonews", "-props", "test/jalview/testProps.jvprops" });
 
     Cache.applicationProperties.setProperty("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
-    
+
     /*
      * ensure the panel has been repainted and so ViewportRanges set
      */
-    SwingUtilities.invokeAndWait(new Runnable() {
-		@Override
-		public void run() {
-		    af.repaint();
-		}});
+    SwingUtilities.invokeAndWait(new Runnable()
+    {
+      @Override
+      public void run()
+      {
+        af.repaint();
+      }
+    });
 
     /*
      * wait for Consensus thread to complete
@@ -128,8 +132,8 @@ public class AlignmentPanelTest
     scrollpos = 130;
     af.getViewport().showAllHiddenColumns();
     af.alignPanel.setScrollValues(scrollpos, 5);
-    assertEquals(ranges.getEndRes(), af.getViewport()
-            .getAlignment().getWidth() - 1);
+    assertEquals(ranges.getEndRes(),
+            af.getViewport().getAlignment().getWidth() - 1);
 
     // now hide some columns, and scroll to position within <width>
     // distance of the end of the alignment
@@ -137,9 +141,11 @@ public class AlignmentPanelTest
     // columns
     af.getViewport().hideColumns(30, 50);
     af.alignPanel.setScrollValues(scrollpos, 5);
-    assertEquals(ranges.getEndRes(), af.getViewport()
-            .getAlignment().getWidth() - 1 - 21); // 21 is the number of hidden
-                                                  // columns
+    assertEquals(ranges.getEndRes(),
+            af.getViewport().getAlignment().getWidth() - 1 - 21); // 21 is the
+                                                                  // number of
+                                                                  // hidden
+                                                                  // columns
   }
 
   /**
@@ -169,8 +175,8 @@ public class AlignmentPanelTest
   }
 
   /**
-   * Test the variant of calculateIdWidth that only recomputes the width if it is
-   * not already saved in the viewport (initial value is -1)
+   * Test the variant of calculateIdWidth that only recomputes the width if it
+   * is not already saved in the viewport (initial value is -1)
    */
   @Test(groups = "Functional")
   public void testCalculateIdWidth_noArgs()
@@ -242,7 +248,8 @@ public class AlignmentPanelTest
     // Assumption ID_WIDTH_PADDING == 4
     int expwidth = 4 + fmfor.stringWidth(aa.label);
     d = af.alignPanel.calculateIdWidth(2000);
-    assertEquals(d.width, expwidth); // 228 == ID_WIDTH_PADDING + pixel width of "THIS IS A VERY LONG LABEL INDEED"
+    assertEquals(d.width, expwidth); // 228 == ID_WIDTH_PADDING + pixel width of
+                                     // "THIS IS A VERY LONG LABEL INDEED"
     assertEquals(d.height, 12);
 
     /*
@@ -284,41 +291,43 @@ public class AlignmentPanelTest
     Cache.setProperty("FIGURE_AUTOIDWIDTH", Boolean.TRUE.toString());
     assertEquals(115, af.alignPanel.getVisibleIdWidth(false));
   }
- 
+
   @Test(groups = "Functional")
   public void testSetOverviewTitle()
   {
     OverviewPanel ov1 = this.af.openOverviewPanel(true);
     String alignFrameTitle = af.getTitle();
     assertEquals(ov1.getTitle(), "Overview " + alignFrameTitle);
-    
+
     /*
      * on New View, existing overview should get " Original" added to title
      * and new view's overview should get " View 1" added
      */
     af.newView_actionPerformed(null);
-    assertEquals(ov1.getTitle(), "Overview " + alignFrameTitle + " Original");
+    assertEquals(ov1.getTitle(),
+            "Overview " + alignFrameTitle + " Original");
     OverviewPanel ov2 = this.af.openOverviewPanel(true);
     assertEquals(ov2.getTitle(), "Overview " + alignFrameTitle + " View 1");
   }
-  
+
   @Test(groups = "Functional")
   public void testSetOverviewTitle_automaticOverview()
   {
-    Cache.setProperty("SHOW_OVERVIEW",  "true");
+    Cache.setProperty("SHOW_OVERVIEW", "true");
     AlignFrame alignFrame = new FileLoader().LoadFileWaitTillLoaded(
             "examples/uniref50.fa", DataSourceType.FILE);
     OverviewPanel ov1 = alignFrame.alignPanel.getOverviewPanel();
     assertNotNull(ov1);
     String alignFrameTitle = alignFrame.getTitle();
     assertEquals(ov1.getTitle(), "Overview " + alignFrameTitle);
-    
+
     /*
      * on New View, existing overview should get " Original" added to title
      * and new view's automatic overview should have " View 1" added
      */
     alignFrame.newView_actionPerformed(null);
-    assertEquals(ov1.getTitle(), "Overview " + alignFrameTitle + " Original");
+    assertEquals(ov1.getTitle(),
+            "Overview " + alignFrameTitle + " Original");
     OverviewPanel ov2 = alignFrame.alignPanel.getOverviewPanel();
     assertNotNull(ov2);
     assertEquals(ov2.getTitle(), "Overview " + alignFrameTitle + " View 1");