X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignmentPanelTest.java;h=fd67ac4d068e4d62e2761a765a2070e0551b2a69;hb=1bbf9cd2904a084b5f4df2db064a477480e5c688;hp=2819dbfc405358908abbffd38dae360cd1fedd37;hpb=a57976ba40e1abe6d7c1940386e1a25419ef9c9d;p=jalview.git

diff --git a/test/jalview/gui/AlignmentPanelTest.java b/test/jalview/gui/AlignmentPanelTest.java
index 2819dbf..fd67ac4 100644
--- a/test/jalview/gui/AlignmentPanelTest.java
+++ b/test/jalview/gui/AlignmentPanelTest.java
@@ -31,6 +31,8 @@ import jalview.io.DataSourceType;
 import jalview.io.FileLoader;
 import jalview.viewmodel.ViewportRanges;
 
+import java.lang.reflect.InvocationTargetException;
+
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
@@ -131,15 +133,17 @@ public class AlignmentPanelTest
   AlignFrame af;
 
   @BeforeMethod(alwaysRun = true)
-  public void setUp()
+  public void setUp() throws InvocationTargetException, InterruptedException
   {
     Jalview.main(new String[] { "-nonews", "-props",
         "test/jalview/testProps.jvprops" });
 
-    Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+    Cache.setPropertyNoSave("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
+    
+    af.paintImmediately(af.getBounds());
 
     /*
      * wait for Consensus thread to complete
@@ -150,7 +154,7 @@ public class AlignmentPanelTest
       {
         try
         {
-          wait(50);
+          wait(250); // BH was 50
         } catch (InterruptedException e)
         {
         }
@@ -189,6 +193,8 @@ public class AlignmentPanelTest
     int scrollpos = 60;
     af.getViewport().hideColumns(30, 50);
     af.alignPanel.setScrollValues(scrollpos, 5);
+
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), oldres + scrollpos);
 
     // scroll to position within hidden columns, still sets endres to oldres +
@@ -206,6 +212,7 @@ public class AlignmentPanelTest
     scrollpos = 130;
     af.getViewport().showAllHiddenColumns();
     af.alignPanel.setScrollValues(scrollpos, 5);
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1);
 
@@ -214,6 +221,7 @@ public class AlignmentPanelTest
     // endRes should be set to width of alignment - 1 - the number of hidden
     // columns
     af.getViewport().hideColumns(30, 50);
+    af.paintImmediately(af.getBounds());
     af.alignPanel.setScrollValues(scrollpos, 5);
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1 - 21); // 21 is the number of hidden
@@ -222,7 +230,7 @@ public class AlignmentPanelTest
 
   /**
    * Test that update layout reverts to original (unwrapped) values for endRes
-   * and endSeq when switching from wrapped to unwrapped mode (JAL-2739)
+   * when switching from wrapped back to unwrapped mode (JAL-2739)
    */
   @Test(groups = "Functional")
   public void TestUpdateLayout_endRes()
@@ -234,15 +242,16 @@ public class AlignmentPanelTest
     // wrap
     af.alignPanel.getAlignViewport().setWrapAlignment(true);
     af.alignPanel.updateLayout();
+    af.paintImmediately(af.getBounds());
 
-    // endRes changes
+    // endRes has changed
     assertNotEquals(ranges.getEndRes(), endres);
 
     // unwrap
     af.alignPanel.getAlignViewport().setWrapAlignment(false);
     af.alignPanel.updateLayout();
-
-    // endRes and endSeq back to original values
+    af.paintImmediately(af.getBounds());
+    // endRes back to original value
     assertEquals(ranges.getEndRes(), endres);
 
   }