X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAlignmentPanelTest.java;h=fd67ac4d068e4d62e2761a765a2070e0551b2a69;hb=1bbf9cd2904a084b5f4df2db064a477480e5c688;hp=e84b87ae7cef861cdd83f13f773fa7f1b8decdb7;hpb=4e77e758e10a6b83902b3cc21a669da8bcd0dc8f;p=jalview.git

diff --git a/test/jalview/gui/AlignmentPanelTest.java b/test/jalview/gui/AlignmentPanelTest.java
index e84b87a..fd67ac4 100644
--- a/test/jalview/gui/AlignmentPanelTest.java
+++ b/test/jalview/gui/AlignmentPanelTest.java
@@ -31,6 +31,8 @@ import jalview.io.DataSourceType;
 import jalview.io.FileLoader;
 import jalview.viewmodel.ViewportRanges;
 
+import java.lang.reflect.InvocationTargetException;
+
 import org.testng.annotations.BeforeMethod;
 import org.testng.annotations.Test;
 
@@ -131,15 +133,17 @@ public class AlignmentPanelTest
   AlignFrame af;
 
   @BeforeMethod(alwaysRun = true)
-  public void setUp()
+  public void setUp() throws InvocationTargetException, InterruptedException
   {
     Jalview.main(new String[] { "-nonews", "-props",
         "test/jalview/testProps.jvprops" });
 
-    Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+    Cache.setPropertyNoSave("SHOW_IDENTITY",
             Boolean.TRUE.toString());
     af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
             DataSourceType.FILE);
+    
+    af.paintImmediately(af.getBounds());
 
     /*
      * wait for Consensus thread to complete
@@ -150,7 +154,7 @@ public class AlignmentPanelTest
       {
         try
         {
-          wait(50);
+          wait(250); // BH was 50
         } catch (InterruptedException e)
         {
         }
@@ -189,6 +193,8 @@ public class AlignmentPanelTest
     int scrollpos = 60;
     af.getViewport().hideColumns(30, 50);
     af.alignPanel.setScrollValues(scrollpos, 5);
+
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), oldres + scrollpos);
 
     // scroll to position within hidden columns, still sets endres to oldres +
@@ -206,6 +212,7 @@ public class AlignmentPanelTest
     scrollpos = 130;
     af.getViewport().showAllHiddenColumns();
     af.alignPanel.setScrollValues(scrollpos, 5);
+    af.paintImmediately(af.getBounds());
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1);
 
@@ -214,6 +221,7 @@ public class AlignmentPanelTest
     // endRes should be set to width of alignment - 1 - the number of hidden
     // columns
     af.getViewport().hideColumns(30, 50);
+    af.paintImmediately(af.getBounds());
     af.alignPanel.setScrollValues(scrollpos, 5);
     assertEquals(ranges.getEndRes(), af.getViewport()
             .getAlignment().getWidth() - 1 - 21); // 21 is the number of hidden
@@ -234,6 +242,7 @@ public class AlignmentPanelTest
     // wrap
     af.alignPanel.getAlignViewport().setWrapAlignment(true);
     af.alignPanel.updateLayout();
+    af.paintImmediately(af.getBounds());
 
     // endRes has changed
     assertNotEquals(ranges.getEndRes(), endres);
@@ -241,7 +250,7 @@ public class AlignmentPanelTest
     // unwrap
     af.alignPanel.getAlignViewport().setWrapAlignment(false);
     af.alignPanel.updateLayout();
-
+    af.paintImmediately(af.getBounds());
     // endRes back to original value
     assertEquals(ranges.getEndRes(), endres);