X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FAnnotationChooserTest.java;h=f08fa8dcd5b1266e21ff4f3a7ec36f793439c6e3;hb=d52084e9014ef22f4449e35307a940d0e6f5766d;hp=4be475989f8f2f7a1c1a0d5564d11bf2acd848a8;hpb=8f118c154e74caaef6bec19acd0466904ac424d4;p=jalview.git

diff --git a/test/jalview/gui/AnnotationChooserTest.java b/test/jalview/gui/AnnotationChooserTest.java
index 4be4759..f08fa8d 100644
--- a/test/jalview/gui/AnnotationChooserTest.java
+++ b/test/jalview/gui/AnnotationChooserTest.java
@@ -78,12 +78,12 @@ public class AnnotationChooserTest
     // pin down annotation sort order for test
     Cache.applicationProperties.setProperty(Preferences.SORT_ANNOTATIONS,
             SequenceAnnotationOrder.NONE.name());
-    final String True = Boolean.TRUE.toString();
+    final String TRUE = Boolean.TRUE.toString();
     Cache.applicationProperties.setProperty(
-            Preferences.SHOW_AUTOCALC_ABOVE, True);
-    Cache.applicationProperties.setProperty("SHOW_QUALITY", True);
-    Cache.applicationProperties.setProperty("SHOW_CONSERVATION", True);
-    Cache.applicationProperties.setProperty("SHOW_IDENTITY", True);
+            Preferences.SHOW_AUTOCALC_ABOVE, TRUE);
+    Cache.applicationProperties.setProperty("SHOW_QUALITY", TRUE);
+    Cache.applicationProperties.setProperty("SHOW_CONSERVATION", TRUE);
+    Cache.applicationProperties.setProperty("SHOW_IDENTITY", TRUE);
 
     AlignmentI al = new jalview.io.FormatAdapter().readFile(TEST_DATA,
             AppletFormatAdapter.PASTE, "FASTA");
@@ -759,6 +759,9 @@ public class AnnotationChooserTest
       assertTrue(i + "'th sequence not visible", anns[i].visible);
     }
 
+    /*
+     * check options to hide JMol and IUPRED annotations for all sequences
+     */
     final Checkbox hideCheckbox = (Checkbox) getComponent(testee, 1, 0, 1);
     setSelected(hideCheckbox, true);
 
@@ -772,8 +775,8 @@ public class AnnotationChooserTest
     assertTrue(anns[0].visible); // Conservation
     assertTrue(anns[1].visible); // Quality
     assertTrue(anns[2].visible); // Consensus
-    assertTrue(anns[3].visible); // Beauty (not seq-related)
-    assertFalse(anns[4].visible); // IUPRED
+    assertFalse(anns[3].visible); // IUPRED
+    assertTrue(anns[4].visible); // Beauty (not seq-related)
     assertFalse(anns[5].visible); // JMol
     assertFalse(anns[6].visible); // IUPRED
     assertFalse(anns[7].visible); // JMol