X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FSeqCanvasTest.java;h=aa50301f215b39d30dbc83773f62bb9613ab9307;hb=4b7d3640209c4434d569c746672cf9eed4250ace;hp=fb48fdbed163af7df91c5f3f43b1d85672b6db44;hpb=c7d01f83f2f62a875b343502bad8cc6fe5701577;p=jalview.git diff --git a/test/jalview/gui/SeqCanvasTest.java b/test/jalview/gui/SeqCanvasTest.java index fb48fdb..aa50301 100644 --- a/test/jalview/gui/SeqCanvasTest.java +++ b/test/jalview/gui/SeqCanvasTest.java @@ -1,20 +1,50 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.gui; +import java.awt.Font; +import java.awt.FontMetrics; + +import org.testng.annotations.BeforeMethod; +import org.testng.annotations.Test; import static org.testng.Assert.assertEquals; +import static org.testng.Assert.assertFalse; +import static org.testng.Assert.assertNotNull; +import static org.testng.Assert.assertNull; +import static org.testng.Assert.assertTrue; +import jalview.bin.Cache; import jalview.datamodel.AlignmentI; +import jalview.datamodel.SearchResults; +import jalview.datamodel.SearchResultsI; +import jalview.io.DataSourceType; import jalview.io.DataSourceType; import jalview.io.FileLoader; -import java.awt.Font; -import java.awt.FontMetrics; - -import org.testng.annotations.Test; - import junit.extensions.PA; public class SeqCanvasTest { + private AlignFrame af; + /** * Test the method that computes wrapped width in residues, height of wrapped * widths in pixels, and the number of widths visible @@ -22,23 +52,21 @@ public class SeqCanvasTest @Test(groups = "Functional") public void testCalculateWrappedGeometry_noAnnotations() { - AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( - "examples/uniref50.fa", DataSourceType.FILE); AlignViewport av = af.getViewport(); AlignmentI al = av.getAlignment(); assertEquals(al.getWidth(), 157); assertEquals(al.getHeight(), 15); + av.getRanges().setStartEndSeq(0, 14); + + SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas; av.setWrapAlignment(true); - av.getRanges().setStartEndSeq(0, 14); av.setFont(new Font("SansSerif", Font.PLAIN, 14), true); int charHeight = av.getCharHeight(); int charWidth = av.getCharWidth(); assertEquals(charHeight, 17); assertEquals(charWidth, 12); - SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas; - /* * first with scales above, left, right */ @@ -57,13 +85,15 @@ public class SeqCanvasTest int canvasWidth = 400; int canvasHeight = 300; int residueColumns = (canvasWidth - 2 * labelWidth) / charWidth; - int wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); + int wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, + canvasHeight); assertEquals(wrappedWidth, residueColumns); assertEquals(PA.getValue(testee, "labelWidthWest"), labelWidth); assertEquals(PA.getValue(testee, "labelWidthEast"), labelWidth); assertEquals(PA.getValue(testee, "wrappedSpaceAboveAlignment"), 2 * charHeight); - int repeatingHeight = (int) PA.getValue(testee, "wrappedRepeatHeightPx"); + int repeatingHeight = (int) PA.getValue(testee, + "wrappedRepeatHeightPx"); assertEquals(repeatingHeight, charHeight * (2 + al.getHeight())); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 1); @@ -77,8 +107,8 @@ public class SeqCanvasTest assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 3); /* - * reduce canvas height by 1 pixel - should not be enough height - * to draw 3 widths + * reduce canvas height by 1 pixel + * - should not be enough height to draw 3 widths */ canvasHeight -= 1; testee.calculateWrappedGeometry(canvasWidth, canvasHeight); @@ -150,11 +180,11 @@ public class SeqCanvasTest canvasWidth += 8; wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); - assertEquals(wrappedWidth, 27); + assertEquals(wrappedWidth, 27); // 8px not enough canvasWidth += 1; wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); - assertEquals(wrappedWidth, 28); + assertEquals(wrappedWidth, 28); // 9px is enough /* * now West but not East scale - lose 39 pixels or 4 columns @@ -170,11 +200,11 @@ public class SeqCanvasTest canvasWidth += 2; wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); - assertEquals(wrappedWidth, 24); + assertEquals(wrappedWidth, 24); // 2px not enough canvasWidth += 1; wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); - assertEquals(wrappedWidth, 25); + assertEquals(wrappedWidth, 25); // 3px is enough /* * turn off scales left and right, make width exactly 157 columns @@ -192,13 +222,11 @@ public class SeqCanvasTest @Test(groups = "Functional") public void testCalculateWrappedGeometry_withAnnotations() { - AlignFrame af = new FileLoader().LoadFileWaitTillLoaded( - "examples/uniref50.fa", DataSourceType.FILE); AlignViewport av = af.getViewport(); AlignmentI al = av.getAlignment(); assertEquals(al.getWidth(), 157); assertEquals(al.getHeight(), 15); - + av.setWrapAlignment(true); av.getRanges().setStartEndSeq(0, 14); av.setFont(new Font("SansSerif", Font.PLAIN, 14), true); @@ -206,9 +234,9 @@ public class SeqCanvasTest int charWidth = av.getCharWidth(); assertEquals(charHeight, 17); assertEquals(charWidth, 12); - + SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas; - + /* * first with scales above, left, right */ @@ -228,26 +256,29 @@ public class SeqCanvasTest int canvasWidth = 400; int canvasHeight = 300; int residueColumns = (canvasWidth - 2 * labelWidth) / charWidth; - int wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, canvasHeight); + int wrappedWidth = testee.calculateWrappedGeometry(canvasWidth, + canvasHeight); assertEquals(wrappedWidth, residueColumns); assertEquals(PA.getValue(testee, "labelWidthWest"), labelWidth); assertEquals(PA.getValue(testee, "labelWidthEast"), labelWidth); assertEquals(PA.getValue(testee, "wrappedSpaceAboveAlignment"), 2 * charHeight); - int repeatingHeight = (int) PA.getValue(testee, "wrappedRepeatHeightPx"); + int repeatingHeight = (int) PA.getValue(testee, + "wrappedRepeatHeightPx"); assertEquals(repeatingHeight, charHeight * (2 + al.getHeight()) - + annotationHeight); + + SeqCanvas.SEQS_ANNOTATION_GAP + annotationHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 1); - + /* - * repeat height is 17 * (2 + 15) = 289 + annotationHeight = 507 - * make canvas height 2 * 289 + 3 * charHeight so just enough to - * draw 2 widths and the first sequence of a third + * repeat height is 17 * (2 + 15) = 289 + 3 + annotationHeight = 510 + * make canvas height 2 of these plus 3 charHeights + * so just enough to draw 2 widths, gap + scale + the first sequence of a third */ - canvasHeight = charHeight * (17 * 2 + 3) + 2 * annotationHeight; + canvasHeight = charHeight * (17 * 2 + 3) + + 2 * (annotationHeight + SeqCanvas.SEQS_ANNOTATION_GAP); testee.calculateWrappedGeometry(canvasWidth, canvasHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 3); - + /* * reduce canvas height by 1 pixel - should not be enough height * to draw 3 widths @@ -255,19 +286,20 @@ public class SeqCanvasTest canvasHeight -= 1; testee.calculateWrappedGeometry(canvasWidth, canvasHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 2); - + /* * turn off scale above - can now fit in 2 and a bit widths */ av.setScaleAboveWrapped(false); testee.calculateWrappedGeometry(canvasWidth, canvasHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 3); - + /* * reduce height to enough for 2 widths and not quite a third * i.e. two repeating heights + spacer + sequence - 1 pixel */ - canvasHeight = charHeight * (16 * 2 + 2) + 2 * annotationHeight - 1; + canvasHeight = charHeight * (16 * 2 + 2) + + 2 * (annotationHeight + SeqCanvas.SEQS_ANNOTATION_GAP) - 1; testee.calculateWrappedGeometry(canvasWidth, canvasHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 2); @@ -278,4 +310,84 @@ public class SeqCanvasTest testee.calculateWrappedGeometry(canvasWidth, canvasHeight); assertEquals(PA.getValue(testee, "wrappedVisibleWidths"), 3); } + + /** + * Test simulates loading an unwrapped alignment, shrinking it vertically so + * not all sequences are visible, then changing to wrapped mode. The ranges + * endSeq should be unchanged, but the vertical repeat height should include + * all sequences. + */ + @Test(groups = "Functional_Failing") + public void testCalculateWrappedGeometry_fromScrolled() + { + AlignViewport av = af.getViewport(); + AlignmentI al = av.getAlignment(); + assertEquals(al.getWidth(), 157); + assertEquals(al.getHeight(), 15); + av.getRanges().setStartEndSeq(0, 3); + av.setFont(new Font("SansSerif", Font.PLAIN, 14), true); + av.setWrapAlignment(true); + av.setShowAnnotation(false); + av.setScaleAboveWrapped(true); + + SeqCanvas testee = af.alignPanel.getSeqPanel().seqCanvas; + + int charHeight = av.getCharHeight(); + int charWidth = av.getCharWidth(); + assertEquals(charHeight, 17); + assertEquals(charWidth, 12); + + int canvasWidth = 400; + int canvasHeight = 300; + testee.calculateWrappedGeometry(canvasWidth, canvasHeight); + + assertEquals(av.getRanges().getEndSeq(), 3); // unchanged + int repeatingHeight = (int) PA.getValue(testee, + "wrappedRepeatHeightPx"); + assertEquals(repeatingHeight, charHeight * (2 + al.getHeight())); + } + + @BeforeMethod(alwaysRun = true) + public void setUp() + { + Cache.loadProperties("test/jalview/io/testProps.jvprops"); + Cache.applicationProperties.setProperty("SHOW_IDENTITY", + Boolean.TRUE.toString()); + af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa", + DataSourceType.FILE); + + /* + * wait for Consensus thread to complete + */ + do + { + try + { + Thread.sleep(50); + } catch (InterruptedException x) + { + } + } while (af.getViewport().getCalcManager().isWorking()); + } + + @Test(groups = "Functional") + public void testClear_HighlightAndSelection() + { + AlignViewport av = af.getViewport(); + SearchResultsI highlight = new SearchResults(); + highlight.addResult( + av.getAlignment().getSequenceAt(1).getDatasetSequence(), 50, + 80); + af.alignPanel.highlightSearchResults(highlight); + af.avc.markHighlightedColumns(false, false, false); + assertNotNull(av.getSearchResults(), + "No highlight was created on alignment"); + assertFalse(av.getColumnSelection().isEmpty(), + "No selection was created from highlight"); + af.deselectAllSequenceMenuItem_actionPerformed(null); + assertTrue(av.getColumnSelection().isEmpty(), + "No Selection should be present after deselecting all."); + assertNull(av.getSearchResults(), + "No higlighted search results should be present after deselecting all."); + } }