X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=test%2Fjalview%2Fgui%2FSeqPanelTest.java;h=649c78ae7692a61e9ef4cccdf7c45f3f5971d817;hb=cc36e0cc33145e21186643a28b975be1a01d2d55;hp=8cec90c2ad78525251a60f3695bdd64003b8177d;hpb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;p=jalview.git

diff --git a/test/jalview/gui/SeqPanelTest.java b/test/jalview/gui/SeqPanelTest.java
index 8cec90c..649c78a 100644
--- a/test/jalview/gui/SeqPanelTest.java
+++ b/test/jalview/gui/SeqPanelTest.java
@@ -250,7 +250,8 @@ public class SeqPanelTest
   @AfterMethod(alwaysRun = true)
   public void tearDown()
   {
-    Desktop.instance.closeAll_actionPerformed(null);
+    if (Desktop.instance != null)
+      Desktop.instance.closeAll_actionPerformed(null);
   }
 
   @Test(groups = "Functional")
@@ -788,7 +789,7 @@ public class SeqPanelTest
   }
 
   @Test(groups = "Functional")
-  public void testFindColumn_wrapped()
+  public void testFindColumn_and_FindAlignmentColumn_wrapped()
   {
     Cache.applicationProperties.setProperty("WRAP_ALIGNMENT", "true");
     AlignFrame alignFrame = new FileLoader().LoadFileWaitTillLoaded(
@@ -810,6 +811,7 @@ public class SeqPanelTest
     MouseEvent evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0,
             x, 0, 0, 0, 0, false, 0);
     assertEquals(testee.findColumn(evt), 0);
+    assertEquals(testee.findAlignmentColumn(evt), 0);
 
     /*
      * not quite one charWidth across
@@ -818,6 +820,7 @@ public class SeqPanelTest
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
     assertEquals(testee.findColumn(evt), 0);
+    assertEquals(testee.findAlignmentColumn(evt), 0);
 
     /*
      * one charWidth across
@@ -826,6 +829,7 @@ public class SeqPanelTest
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
     assertEquals(testee.findColumn(evt), 1);
+    assertEquals(testee.findAlignmentColumn(evt), 1);
 
     /*
      * x over scale left (before drawn columns) results in -1
@@ -839,11 +843,13 @@ public class SeqPanelTest
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
     assertEquals(testee.findColumn(evt), -1);
+    assertEquals(testee.findAlignmentColumn(evt), 0);
 
     x = labelWidth;
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
     assertEquals(testee.findColumn(evt), 0);
+    assertEquals(testee.findAlignmentColumn(evt), 0);
 
     /*
      * x over right edge of last residue (including scale left)
@@ -854,6 +860,7 @@ public class SeqPanelTest
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
     assertEquals(testee.findColumn(evt), residuesWide - 1);
+    assertEquals(testee.findAlignmentColumn(evt), residuesWide - 1);
 
     /*
      * x over scale right (beyond drawn columns) results in -1
@@ -868,7 +875,10 @@ public class SeqPanelTest
     x += 1; // just over left edge of scale right
     evt = new MouseEvent(testee, MouseEvent.MOUSE_MOVED, 0L, 0, x, 0, 0, 0,
             0, false, 0);
+    // on scale
     assertEquals(testee.findColumn(evt), -1);
+    // return right-most column visible
+    assertEquals(testee.findAlignmentColumn(evt), residuesWide2 - 1);
 
     // todo add startRes offset, hidden columns
 
@@ -881,7 +891,7 @@ public class SeqPanelTest
      * use read-only test properties file
      */
     Cache.loadProperties("test/jalview/io/testProps.jvprops");
-    Jalview.main(new String[] { "-nonews" });
+    Jalview.main(new String[] { "--nonews" });
   }
 
   /**
@@ -919,8 +929,8 @@ public class SeqPanelTest
       dna += dna;
     }
     assertEquals(dna.length(), 51200);
-    AlignFrame alignFrame = new FileLoader().LoadFileWaitTillLoaded(dna,
-            DataSourceType.PASTE);
+    AlignFrame alignFrame = new FileLoader()
+            .LoadFileWaitTillLoaded("dna " + dna, DataSourceType.PASTE);
     SeqPanel testee = alignFrame.alignPanel.getSeqPanel();
     AlignViewport av = alignFrame.getViewport();
     av.setScaleAboveWrapped(true);